Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2540 ATGAGTTCTGAGGAAAAGGCTGTGAGTGAAGGACATCACGCTGCTTCGTGCTTAAGAACGGTTTCTCTTCCAGTTCCCAAGGTGGATGATGAACCAGTGGGAATGACTGGGGAATCAACACGTGCTCGTCATTGGAAGCGGCAAAATCTTCTCCTAGAAATACCCCCAAGAACATCAGAAGAGCATTCTCAAGAATTTGTTGCAATTAAGATGCCAATAACTCCAAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCACTTTCTGTTGACGCCCCAACTTATAATTCTCCTGGGCCCTCTGCATCAAGAGGCAAAACATCCATTAAAAGTATCTTACCAAAGTTGAACTTCAAGCATAAGACATCATCAGATATTGAAAAGGCTTTTACTGCAGCTCCAGAAAGTTCCTCTCCAGCCCCTCGAGAAAAGCTTTCAATTGCTAGATCATTGTCCCTTACTAAGATATTTACACCTAAAATTAAGAGAACGTCATCATTACCAGTGGATGAACTTCATTCAAACCCAGAATCTGTTCATGCTGAAAGTGTTGGCAGATCTCTATATGGAACAGAGGCGCAGGGGCAGATAGCCCGTTCACAGTCGGTGCCTGTCACTGGTCTAGACAAGGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCCTCCACTCCGCATGTAAAGGGAAAAAAAGAATTGTTGGCCACATCCCCATCAAAGGATACTGCCTTTCTTGGTTCAGAGAACGACGACGACGACAACGGCGATGGCGATGATGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTGTGTAGGATTTGTTTGGTTGATCTGTGTGAAGGAGGTGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCCATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTCACACTTTTAAGGATCCAAAATGTTGTAACTCAGAACACGGGAGCTAACAGGTCTCAGCTGTCAGATGCAAGTGCATACAGGGTTTGGCAGGAAGTTCCTGTTCTTGTCATTGTGAGCATGTTAGCCTATTTCTGTTTCCTTGAGCAGCTATTGGTCGGAAAAATGGGTACCGGTGCAATTGCCATTTCTCTTCCATTCTCATGTGTACTGGGCCTGCTCTCCTCCATGACTTCATCGACCATGGTGCATGGCAGGTTCATCTGGTTTTATGCGTCTGCCCAATTTGCTCTGGTGGTTCTCTTCGCACATATATTTTACTCATTGGTTCACGTGCAGGCAGTTCTGGCAATCCTTCTTGCAACATTTGCCGGGTTTGGTGTAGTGATGAGCGGGAGCTCTGTTCTTGTTGAAATTACTCGATGGAGAAGGAGATGGCTGGCACCTCACGGTGCAATGCAAGCACATTCAGGCCCTCCCAGCGGCAGTCAAACAGTGGCACTAAATCAACAAAACTCGATTTAG 1521 0.4563 MSSEEKAVSEGHHAASCLRTVSLPVPKVDDEPVGMTGESTRARHWKRQNLLLEIPPRTSEEHSQEFVAIKMPITPSPTPTPKRVNFLVTSLSVDAPTYNSPGPSASRGKTSIKSILPKLNFKHKTSSDIEKAFTAAPESSSPAPREKLSIARSLSLTKIFTPKIKRTSSLPVDELHSNPESVHAESVGRSLYGTEAQGQIARSQSVPVTGLDKGIRRMDSFFRVIPSTPHVKGKKELLATSPSKDTAFLGSENDDDDNGDGDDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVVTQNTGANRSQLSDASAYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVHGRFIWFYASAQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGVVMSGSSVLVEITRWRRRWLAPHGAMQAHSGPPSGSQTVALNQQNSI 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2540 506 SMART ringv_2 276 325 IPR011016 GO:0008270
Prci7g2540 506 MobiDBLite consensus disorder prediction 252 268 - -
Prci7g2540 506 CDD RING_CH-C4HC3_MARCH 277 325 - -
Prci7g2540 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 332 IPR013083 -
Prci7g2540 506 SUPERFAMILY RING/U-box 273 328 - -
Prci7g2540 506 ProSiteProfiles Zinc finger RING-CH-type profile. 269 331 IPR011016 GO:0008270
Prci7g2540 506 Pfam RING-variant domain 277 324 IPR011016 GO:0008270
Prci7g2540 506 PANTHER OS02G0165000 PROTEIN 31 481 - -
Prci7g2540 506 MobiDBLite consensus disorder prediction 243 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2540 Prci-Chr7 37792968 37799256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2540 263 331 C3H Transcription Factor Family AT2G37950 45.714 3.12e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2540 - - gmx:100788108 657.907