Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2539 ATGACTGGGGAATCAACACGTGCTCGTCATTGGAAGCGGCAAAATCTTCTCCTAGAAATACCCCCAAGAACATCAGAAGAGCATTCTCAAGAATTTGTTGCAATTAAGATGCCAATAACTCCAAGTCCCACTCCCACTCCCAAGAGAGTGAATTTTCTTGTGACTTCACTTTCTGTTGACGCCCCAACTTATAATTCTCCTGGGCCCTCTGCATCAAGAGGCAAAACATCCATTAAAAGTATCTTACCAAAGTTGAACTTCAAGCATAAGACATCATCAGATATTGAAAAGGCTTTTACTGCAGCTCCAGAAAGTTCCTCTCCAGCCCCTCGAGAAAAGCTTTCAATTGCTAGATCATTGTCCCTTACTAAGATATTTACACCTAAAATTAAGAGAACGTCATCATTACCAGTGGATGAACTTCATTCAAACCCAGAATCTGTTCATGCTGAAAGTGTTGGCAGATCTCTATATGGAACAGAGGCGCAGGGGCAGATAGCCCGTTCACAGTCGGTGCCTGTCACTGGTCTAGACAAGGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCCTCCACTCCGCATGTAAAGGGAAAAAAAGAATTGTTGGCCACATCCCCATCAAAGGATACTGCCTTTCTTGGTTCAGAGAACGACGACGACGACAACGGCGATGGCGATGATGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTGTGTAGGATTTGTTTGGTTGATCTGTGTGAAGGAGGTGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCCATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTCACACTTTTAAGGATCCAAAATGTTGTAACTCAGAACACGGGAGCTAACAGGTCTCAGCTGTCAGATGCAAGTGCATACAGGGTTTGGCAGGAAGTTCCTGTTCTTGTCATTGTGAGCATGTTAGCCTATTTCTGTTTCCTTGAGCAGCTATTGCAGGTCGGAAAAATGGGTACCGGTGCAATTGCCATTTCTCTTCCATTCTCATGTGTACTGGGCCTGCTCTCCTCCATGACTTCATCGACCATGGTGCATGGCAGGTTCATCTGGTTTTATGCGTCTGCCCAATTTGCTCTGGTGGTTCTCTTCGCACATATATTTTACTCATTGGTTCACGTGCAGGCAGTTCTGGCAATCCTTCTTGCAACATTTGCCGGGTTTGGTGTAGTGATGAGCGGGAGCTCTGTTCTTGTTGAAATTACTCGATGGAGAAGGAGATGGCTGGCACCTCACGGTGCAATGCAAGCACATTCAGGCCCTCCCAGCGGCAGTCAAACAGTGGCACTAAATCAACAAAACTCGATTTAG 1422 0.4543 MTGESTRARHWKRQNLLLEIPPRTSEEHSQEFVAIKMPITPSPTPTPKRVNFLVTSLSVDAPTYNSPGPSASRGKTSIKSILPKLNFKHKTSSDIEKAFTAAPESSSPAPREKLSIARSLSLTKIFTPKIKRTSSLPVDELHSNPESVHAESVGRSLYGTEAQGQIARSQSVPVTGLDKGIRRMDSFFRVIPSTPHVKGKKELLATSPSKDTAFLGSENDDDDNGDGDDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVVTQNTGANRSQLSDASAYRVWQEVPVLVIVSMLAYFCFLEQLLQVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVHGRFIWFYASAQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGVVMSGSSVLVEITRWRRRWLAPHGAMQAHSGPPSGSQTVALNQQNSI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2539 473 SUPERFAMILY RING/U-box 239 294 - -
Prci7g2539 473 CDD RING_CH-C4HC3_MARCH 243 291 - -
Prci7g2539 473 MobiDBLite consensus disorder prediction 218 234 - -
Prci7g2539 473 ProSiteProfiles Zinc finger RING-CH-type profile. 235 297 IPR011016 GO:0008270
Prci7g2539 473 Pfam RING-variant domain 243 290 IPR011016 GO:0008270
Prci7g2539 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 298 IPR013083 -
Prci7g2539 473 SMART ringv_2 242 291 IPR011016 GO:0008270
Prci7g2539 473 PANTHER OS02G0165000 PROTEIN 8 448 - -
Prci7g2539 473 MobiDBLite consensus disorder prediction 209 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2539 Prci-Chr7 37792968 37799265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2539 229 297 C3H Transcription Factor Family AT2G37950 45.714 2.66e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2539 - - gmx:100788108 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2539 7 37792968 37799265 Prci6g0402 6 2585710 2590728 CCT
Prci7g2539 7 37792968 37799265 Prci7g2539 7 37792968 37799265 ECH