Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2506 ATGAGTAGTCTAAGGCCAGAATCGCATGTAGCACAACAGATTCGGCGTGACAAGTTGAGAATCCAGAATAGCTCCCAGCATTTACAAGATTTCCCGACTAATATTGAACAATTGTCACTACACCCAGGCTTAAACTCGGATTTTCTGCAAGTTAGGAATGTCAGAAACGCCAACATGCTTTACGAACCAGCATTTTATTCATCGGAAATGGCCAATTTTTCAACACCGTCGAATCCTTTATCTGCTGGAGACGAAGTCAAACCAAGTAGACTAATGTTACCTCACTATGCTTCATTCCCCCGTTCATCTGTACCGGAACAAGGACCGTCGTCAGCTGATCAACCGCGAGTTAACTTGGGTTATGATTGGATGATCAATTATGGAAGTAGTTCCGGGGTCAATGAAACCAATAATCCCAGCTCTAGTTATGCGACCGAATTGAATAATAACAATGCGCCTGTGTGTCAGCACTTGGGGAAGCCTAGTTACAACGAACTCATGGGAAGGCAGTTAGGTGATGAAGTGCATCATCCTTCGTTTCTACCTCCACTTTTCCAGAATACTTTACACGATATCGTCAAGTCAGCTTCTATCGGTGCCCAAGGATCCACCGATCATATAGCCTCTCAGATGCAACATCCTGGTCACGGTATCTGGATGGGAAATCAAAGTCAATCAAATTTGTTTCATTTCGGAAATACTAATTTGAGCGACTCCATAAATCCTCAGGGGCTATCTTTATCACTTTCTTCAAATTCCCATTCCAAGGCTTCTCTTGCTGGGTTCCCATTCCGCGATGGGCACGGATCGGACGAACTTTACTCGCGATGTGATAAATCTGCGAAATCTGTTGTGAAGCCTTCATCCTTAGTTACTAAAAATTGTGGGAAATCACTCCAAGACGTCGTGGGAGTAGCTTCGAACGCCAGTGGTTATCGAAGTAATGTAGGCCCGCTCGGGCCTTTCACAGGATATGCAACCATTTTAAAGAGTTCGAGATTCTTGAAACCAGCCCAAGAGTTGTTGGATGAATTCTGTAACATGTGTGGCTCCAACGTTATTAAAGCATCCGATGTTTCTGATATCTCTAGGCTGTCCGGAGAAGCCAGTGCTTATTCTGCAGCAGAAGCTGTCATTAGTGCAACTAAAAGTGGGGTTAGTGCAAAAGGAAGCGTTAGCAATGCAGGCGCTGCTTCGTGTTCTATCTTATTTCATTCCGACGAAAACAGTGGTGCTTGTGAAGCAAGAGGAAACTTTGATTATTCTTCCCTGTCGGCGTATCAACAAAAAAAGTCGAAGCTCCTGTACATGCAAGAGGAGGTTACGAAAAAACACAAGCAATATCACCAACAAATGCATATGGTTGTTTCATCTTTCGAGTCAGTAGCAGGTCTGAGTTCAGCTTCCCCTTATATCACAATGGCTCTCAAGTCGATAACAAGACACTTCAAGTGCCTGAAAAATGCCATCTTGGATCAGATCAAGCATACAAGAGAGGTGTTGGGGGAGGAGTTGTCAGGATCCACGTCTGGTTCAACTAGTAAACTTGACACTGGGCTAACATATCTGGAACAAAGCTTTCAGAAGAACAAAGCTTCATTTCTTGAACCTCAACAAGTTTGGAGGCCACAGAGAGGCTTGCCCGAGCGCGCGGTGGCAATTCTTAAAGCTTGGTTATTTGAACATTTCCTCCACCCGTACCCCACGGATACTGATAAACACATGCTGGCGACACAAACAGGTCTATCTCGAAACCAGGTATCAAACTGGTTCATAAATGCTCGAGTCCGTGTATGGAAGCCAATGGTTGAGGAAATACACAACCTTGAAACAAAAGGCTTCGCAGGTGGCAACCAGAACGAGGGAGCATCTGGGGCAGAAGGAAGCAGTCAACAAGCTATGGTAGCAGAACCTCTAGGCAAGTTTGGTAGACACGGAGATGTAATGCCGGAGAAACAATTCCAGTGTTTGGAAATGAGTCCCTTGGGAGGGAATCCGGAGGGCGTGGGATTTATGGGTGCGGCAGAGCAATGGAATCAAGAGAAGCGGTCTAAATTGGAATGTCAGATTACGCCAAACATGGATGGGGCCTTAATGGGTTTTGTTCCTTACAGGCGTGATGCAGGCCTGGATGTTGGGGGACTCGGGTCTGTGTCGTTAACGCTGGGTCTTAGACATGGGATTGAAGCCGTACAACACCAGCAGCAGCAACAATTACACCAGGAGGACCAGATTAGACATCACTTTGGAGAGCACATGATCCATGACTTTGTGGGTTAG 2280 0.4561 MSSLRPESHVAQQIRRDKLRIQNSSQHLQDFPTNIEQLSLHPGLNSDFLQVRNVRNANMLYEPAFYSSEMANFSTPSNPLSAGDEVKPSRLMLPHYASFPRSSVPEQGPSSADQPRVNLGYDWMINYGSSSGVNETNNPSSSYATELNNNNAPVCQHLGKPSYNELMGRQLGDEVHHPSFLPPLFQNTLHDIVKSASIGAQGSTDHIASQMQHPGHGIWMGNQSQSNLFHFGNTNLSDSINPQGLSLSLSSNSHSKASLAGFPFRDGHGSDELYSRCDKSAKSVVKPSSLVTKNCGKSLQDVVGVASNASGYRSNVGPLGPFTGYATILKSSRFLKPAQELLDEFCNMCGSNVIKASDVSDISRLSGEASAYSAAEAVISATKSGVSAKGSVSNAGAASCSILFHSDENSGACEARGNFDYSSLSAYQQKKSKLLYMQEEVTKKHKQYHQQMHMVVSSFESVAGLSSASPYITMALKSITRHFKCLKNAILDQIKHTREVLGEELSGSTSGSTSKLDTGLTYLEQSFQKNKASFLEPQQVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHNLETKGFAGGNQNEGASGAEGSSQQAMVAEPLGKFGRHGDVMPEKQFQCLEMSPLGGNPEGVGFMGAAEQWNQEKRSKLECQITPNMDGALMGFVPYRRDAGLDVGGLGSVSLTLGLRHGIEAVQHQQQQQLHQEDQIRHHFGEHMIHDFVG 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2506 759 CDD homeodomain 541 602 IPR001356 GO:0003677
Prci7g2506 759 ProSiteProfiles 'Homeobox' domain profile. 538 601 IPR001356 GO:0003677
Prci7g2506 759 Pfam Homeobox KN domain 558 597 IPR008422 GO:0003677|GO:0006355
Prci7g2506 759 Gene3D - 544 606 - -
Prci7g2506 759 SMART HOX_1 541 605 IPR001356 GO:0003677
Prci7g2506 759 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 212 627 - -
Prci7g2506 759 FunFam BEL1-like homeodomain protein 9 544 606 - -
Prci7g2506 759 Pfam Associated with HOX 328 490 IPR006563 -
Prci7g2506 759 SUPERFAMILY Homeodomain-like 543 608 IPR009057 -
Prci7g2506 759 SMART prehox3 323 492 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2506 Prci-Chr7 37554603 37560496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2506 428 726 Homeobox Transcription Factor Family AT4G34610 43.854 1.43e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci7g2506 POX 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2506 - - vum:124831694 659.448