Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2477 ATGCTCAAAATGGATGCTCATGGAGACCCTCTGGTGCACATTAACGACTTCCAGCTTCATGACTTCATCGACAACACCAATTTCGATCAATTTATCAATGTGCTCCGTGGGGAGAATGAACACTCATTCTGTAACTTTGATTCTGACGTTATCAATGGCTGCTTAGCTGATAACCAATTTCTTCCATTACCTGAGAACCCATTTGAGCCTCATGCTGCTGTAAATGTTTATGATCCCAGCTCTACGCTTAGTTCCTTCTCATGTTTTGATGGAGAAGTGACGGGAGGAAGAGGAGAAGAAGAGAATGATTCTTCTGCAACAACAATCACCACCACTGAAACTACCAGTGCTAATGCCAAACAGAAGCCCAAAACTGATCGGTCCAAGACTCTTATCTCTGAAAGGAGGAGGAGGGGCAGAATGAAGGAGAAGCTTTACGCTTTGCGTTCTTTGGTCCCCAACATAACTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTAGCATATGTGCAGGAGCTGCAAGAGAAAGCTAAGAAGCTGAAGGGTGAGGTTAAAGGGCTTGAAGCATCCATGCTAGCGTCAGAAAATGATCAGAGATCAGTTAAAATCCCCATGAAGGTTCAAAACAACCACATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGACATATTTCCAGTGGAGGAAAGAGGGTTTTATGTGAAATTGATGTGCAGTAAAGGAGAAGGAGTGGCTACCTCCCTGTACAGGGCTCTCGAGTCCCTAGCAGGCTTCAATGTTCAGAATTCAAACTTGGCCACAGTTTCTGAGAGATTTCTACTAACATTTACATTAGATGTGAAAGGTTGCGAGCCAGAAATTAACCAGCAAAATCTGAAGCTGTGGGTAGCAAGCGCTCTTCTGAACCAAGGCTTCGAATTTATTACAACTTTCCACGCTTGA 948 0.4409 MLKMDAHGDPLVHINDFQLHDFIDNTNFDQFINVLRGENEHSFCNFDSDVINGCLADNQFLPLPENPFEPHAAVNVYDPSSTLSSFSCFDGEVTGGRGEEENDSSATTITTTETTSANAKQKPKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQELQEKAKKLKGEVKGLEASMLASENDQRSVKIPMKVQNNHINYPICKKIMQMDIFPVEERGFYVKLMCSKGEGVATSLYRALESLAGFNVQNSNLATVSERFLLTFTLDVKGCEPEINQQNLKLWVASALLNQGFEFITTFHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2477 315 Coils Coil 171 198 - -
Prci7g2477 315 Gene3D - 116 191 IPR036638 GO:0046983
Prci7g2477 315 SMART finulus 131 180 IPR011598 GO:0046983
Prci7g2477 315 MobiDBLite consensus disorder prediction 120 136 - -
Prci7g2477 315 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 20 305 - -
Prci7g2477 315 MobiDBLite consensus disorder prediction 94 136 - -
Prci7g2477 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 192 IPR036638 GO:0046983
Prci7g2477 315 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Prci7g2477 315 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
Prci7g2477 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Prci7g2477 315 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2477 Prci-Chr7 37339483 37342758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2477 4 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.111 1.41e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci7g2477 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2477 K26214 - gmx:100805451 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2477 7 37339483 37342758 Prci7g2477 7 37339483 37342758 ECH