Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2471 ATGGCCTCTAGCTCATCAAGCGTCTCTGGCGAACACATCAGCGCCGGAGGAGATTACGGCTCCATCTCGTCCACCACGACCACTCATAATTATGATGAGAGCACCGAGGAAGAGGAAGACATGGCTAACTGCTTAATTCTCTTGGCCCAGAGCGGGGATTCTCATCATCTCAAGCACCGACCTCAATCTCAAGTCGCCAGAACCCATCCGGGAGGCAGCCGGAGATTCGTCGAGACGCCCACCGTCACTGCCGGTGCCGCTCAAGTCGGTTTGTTCGTGTACGAGTGCAAAACGTGTAACCGCAGCTTTCCTTCGTTTCAAGCGCTGGGCGGGCACAGGGCAAGCCACAAAAAGCCTAAGCTGACGTTAGAGGAGAAGAAACAGCCGCCGCCGCCGCCAATACCGCCGCAACTTATCAACAGTTATGGGATTGAAGAGGGTCGGATAAAAAGCAGCCCCCAGATTTCTCTTCAACTAGGCAGCAGCATGAACGGAGTCGCATCGATCAACAAGGCGAAGATTCACGAGTGCTCCATATGCGGGTCCGAATTCACGTCTGGGCAGGCACTGGGGGGCCACATGAGGAGGCACAGGGCATCCATGACCGCTGGCGCGCCCCAGGGGAGTCATGACATCGCTGCAGCTGAAGTGAAGCCAAGAGTGCTGGCGTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCAGCGGGATTCCAAGTTCGAGTGCAGAGCGAAAGAAAAACCACTGGTGCTGTCCGCTCCGTCTCTGGTGGACTGCCATTATTAG 786 0.5636 MASSSSSVSGEHISAGGDYGSISSTTTTHNYDESTEEEEDMANCLILLAQSGDSHHLKHRPQSQVARTHPGGSRRFVETPTVTAGAAQVGLFVYECKTCNRSFPSFQALGGHRASHKKPKLTLEEKKQPPPPPIPPQLINSYGIEEGRIKSSPQISLQLGSSMNGVASINKAKIHECSICGSEFTSGQALGGHMRRHRASMTAGAPQGSHDIAAAEVKPRVLALDLNLPAPEEDQRDSKFECRAKEKPLVLSAPSLVDCHY 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2471 261 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Prci7g2471 261 MobiDBLite consensus disorder prediction 109 135 - -
Prci7g2471 261 PANTHER ZINC FINGER PROTEIN ZAT5 24 245 - -
Prci7g2471 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
Prci7g2471 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Prci7g2471 261 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Prci7g2471 261 Gene3D Classic Zinc Finger 91 197 - -
Prci7g2471 261 MobiDBLite consensus disorder prediction 1 39 - -
Prci7g2471 261 SMART c2h2final6 175 197 IPR013087 -
Prci7g2471 261 SMART c2h2final6 94 116 IPR013087 -
Prci7g2471 261 SUPERFAMILY beta-beta-alpha zinc fingers 93 197 IPR036236 -
Prci7g2471 261 MobiDBLite consensus disorder prediction 1 30 - -
Prci7g2471 261 Pfam C2H2-type zinc finger 93 119 - -
Prci7g2471 261 Pfam C2H2-type zinc finger 175 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2471 Prci-Chr7 37299764 37300937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2471 36 261 C2H2 Transcription Factor Family AT5G04390 41.135 2.83e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci7g2471 zf-C2H2_6 1.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2471 - - pcin:129297388 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2471 7 37299764 37300937 Prci6g0504 6 3288409 3289554 CCT
Prci7g2471 7 37299764 37300937 Prci7g2471 7 37299764 37300937 ECH
Prci7g2471 7 37299764 37300937 Prci6g0504 6 3288409 3289554 ECH