Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2469 ATGCGTCTCTTTGTACTCGACGATCCAAATTACAGAGCCCACACCTCCCTCGAAACATCCGAAATTCAAGAGACAGATCAAAATATGATTTCAAGGGGCACAGCGTCTGGTTTCCCAAATCTCTCTCAAGACCTGCACAACATGTTTCCTCCTGCGGCTGGTGATAATCTGGTTTCGCCTTCTGTTGAATCAGCTCCTTCTCAATCAATCTCGCTCGTCTTCAATCTCTCCGCCCTCAAAGACAAGCTTACGCAGGTTCAGACCCTCGCGGGTATTCTTATCTCCTCGGATCCGACCCTACCAGACTCGACCTGTACAACCTTAGCCAGTATGAATTCTATAATCCAGGAGTTCATAGTCACCGCCTCTTCCATGATGCTCACGTGCCAACACATGGTCCTTAACTTCTCTCCACCACCAGGTATTCATTGCACTGAATCCACCTTTGGCAATTATACAGGTGTGCATAGTAATAATTCAAATACCATAGCCGAACACAGAGAGCAAAGTAATTTTTCTGGTCTTGATCAAACCTTGGACTGGCTCGGTGGTGAAAGCTATGATAATAACAATGATTGTGCTAATAATCTTAAGGATGATGATCATCCGAGCGTTGGAATAAGTGCGACAAAGCGAGAAGTATTTCAAGGGGATGAAAACAATAATGAAGGAAAGGGCGACGACATAATTGAATTGGATGCTGCAGATTTGCTGGCCAAGTACACACATTACTGTCAAATTTGTGGGAAAGGGTTTAAGCGAGATGCGAATTTGAGGATGCATATGAGAGCTCATGGAGACGAGTACAAGACGAGTGCTGCCTTGAGCAACCCGATGAAGAATAGAGGCAAGGAATGTTCGATGAGCACGTATAGGCCTAAGAAATATTCATGTCCACAGGAAGGATGTAGGTGGAACCAGAAGCATGCCAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTACAAGAGAAGCCATTGTCCAAAGATGTACGTGTGCAAAAGGTGCAACTTGAAGCAGTTCTCGGTGCTGTCAGATCTGAGAACACACGAGAAGCACTGCGGGGATCTCAAGTGGCAGTGCTCGTGTGGTAATACGTTTTCAAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTTGGGCACGCTCCAGCTGTCAGCGCCTTGTCGTATTCAGGAAATTTGTTAGAGCAGAAGGCTTTGCAACTGCAGGCAGATGGTAGTTCAAGATGA 1245 0.4554 MRLFVLDDPNYRAHTSLETSEIQETDQNMISRGTASGFPNLSQDLHNMFPPAAGDNLVSPSVESAPSQSISLVFNLSALKDKLTQVQTLAGILISSDPTLPDSTCTTLASMNSIIQEFIVTASSMMLTCQHMVLNFSPPPGIHCTESTFGNYTGVHSNNSNTIAEHREQSNFSGLDQTLDWLGGESYDNNNDCANNLKDDDHPSVGISATKREVFQGDENNNEGKGDDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRGKECSMSTYRPKKYSCPQEGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLKWQCSCGNTFSRKDKLMGHVALFVGHAPAVSALSYSGNLLEQKALQLQADGSSR 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2469 414 Gene3D Classic Zinc Finger 332 382 - -
Prci7g2469 414 Gene3D Classic Zinc Finger 239 267 - -
Prci7g2469 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 270 IPR013087 -
Prci7g2469 414 FunFam Zinc finger protein 574 242 267 - -
Prci7g2469 414 Pfam C2H2-type zinc finger 243 265 - -
Prci7g2469 414 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 64 393 IPR044300 GO:0010044|GO:0010447
Prci7g2469 414 SMART c2h2final6 296 329 IPR013087 -
Prci7g2469 414 SMART c2h2final6 243 265 IPR013087 -
Prci7g2469 414 SMART c2h2final6 334 356 IPR013087 -
Prci7g2469 414 SUPERFAMILY beta-beta-alpha zinc fingers 241 268 IPR036236 -
Prci7g2469 414 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2469 Prci-Chr7 37288328 37289886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2469 69 389 C2H2 Transcription Factor Family AT5G22890 50.286 7.04e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci7g2469 zf-C2H2_6 0.00064 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2469 - - pcin:129316246 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2469 7 37288328 37289886 Prci7g2469 7 37288328 37289886 ECH