Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2374 ATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGCTAAGCCTTCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATCTTGATGAAGAAAATGATCCTGAGGAAACGATGGAAGAAATTGAATATGAAGAAGTAGAAGAAGAGGAAGAGGAGGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAAGATGAAGAAGTTGAAGAAGAAGAAGAAGATGATGATGATGATGCCGATCATGTTGATGACACTGACACCATGCAAAACATTAGTGGTGATGAGGCAAAGGTGGAAGATGATGATGAGAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTAGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTATGGAGGTTAGGGTTATGAAAGGAAAAGATTCTGCTGAAAACAAGGGTTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCTTCTAAAGCCATTGAAGAACTGAATAATAAACAATTTATGGGTAAAAAGATAAAATGTTCATCATCTCAAGCAAAACACCGACTTTTCATTGGTAATGTTCCTAGAAGCTGGGGAGATGAGGATCTAAGGAAGGTTGTAGCTGAGATTGGGCCTGGAGTTACAACTGTGGAACTAGTTAAGGATATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCGACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGAATCCAAAATTCAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATTCTGATTCCTCTGCTGCATCTCAGGTGAGGGCAGTATATGTTAAGAACTTACCTAAGGATGTAACTGGAGATCAACTAAAGAAGCTTTTCGAACACCATGGAAAGATTTCAAAGGTGGTTCTGCCGCCAGCAAAGTCTGGGCAGGAAAGGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATACGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGGTTGACAAGTCGGGAGGATCAAATACACAGAAGTCAGGATTGCTTCCAGGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGGGCTAGGCGCTGGATATGGTGCAGCAGGTCTTGCACAGGTGGCACATTCGAATCCCTTGCAGCCCATGATACATGGAAGGGGTCCTGCTCCAAGTGGAATGGCCATGATGCCCATGCTTTTGCCAGACGGGCGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCACCGTCACATCAGAGAGGCGGCAGGAATGGAGGGAGTGGCAACAGGAACTTCGGCAGTTCAAGCAAGGGAAGGCACAACAATGCTAGTGGCCAAGGGCGCAGATACCGTCCATATTAG 1512 0.4411 MPRGKANSSSVAKPSEPEKPTESDEKVDLDEENDPEETMEEIEYEEVEEEEEEVEEIEEEVEEEEEDEEVEEEEEDDDDDADHVDDTDTMQNISGDEAKVEDDDEKKKHAELLSLPPHGSEVYIGSIPHDASGEDLKAFCESIGEVMEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELNNKQFMGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVAEIGPGVTTVELVKDMKHPTNNRGFAFVDYYNHACAEYSRKKMMNPKFKLGDNAPTVSWADPKNSDSSAASQVRAVYVKNLPKDVTGDQLKKLFEHHGKISKVVLPPAKSGQERNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGSNTQKSGLLPGYPPHVGYNLIGGAYGGLGAGYGAAGLAQVAHSNPLQPMIHGRGPAPSGMAMMPMLLPDGRIGYVLQQPGMQPQTPPSHQRGGRNGGSGNRNFGSSSKGRHNNASGQGRRYRPY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2374 503 MobiDBLite consensus disorder prediction 455 503 - -
Prci7g2374 503 Gene3D - 201 281 IPR012677 -
Prci7g2374 503 FunFam RNA recognition motif-containing protein 21 200 - -
Prci7g2374 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 282 IPR000504 GO:0003723
Prci7g2374 503 CDD RRM_SF 122 194 - -
Prci7g2374 503 MobiDBLite consensus disorder prediction 86 107 - -
Prci7g2374 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Prci7g2374 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 365 IPR000504 GO:0003723
Prci7g2374 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 265 IPR000504 GO:0003723
Prci7g2374 503 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 201 281 - -
Prci7g2374 503 SUPERFAMILY RNA-binding domain, RBD 290 396 IPR035979 GO:0003676
Prci7g2374 503 Coils Coil 40 78 - -
Prci7g2374 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Prci7g2374 503 MobiDBLite consensus disorder prediction 27 85 - -
Prci7g2374 503 Gene3D - 282 387 IPR012677 -
Prci7g2374 503 MobiDBLite consensus disorder prediction 457 493 - -
Prci7g2374 503 MobiDBLite consensus disorder prediction 1 107 - -
Prci7g2374 503 SUPERFAMILY RNA-binding domain, RBD 117 285 IPR035979 GO:0003676
Prci7g2374 503 Gene3D - 4 200 IPR012677 -
Prci7g2374 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Prci7g2374 503 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 489 - -
Prci7g2374 503 SMART rrm1_1 295 368 IPR000504 GO:0003723
Prci7g2374 503 SMART rrm1_1 201 278 IPR000504 GO:0003723
Prci7g2374 503 SMART rrm1_1 121 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2374 Prci-Chr7 36553761 36558961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2374 120 376 Eukaryotic Initiation Factors Gene Family AT1G71770 27.138 8.09e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2374 K13161 - qsa:O6P43_000471 644.039