Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2304 ATGGATGAAATCGATGTTCCTTCCCATTTCCTCTGCCCCATTTCCCTGCAGCTCATGACGGACCCCGTCACGGTACGCACCGGAATCACTTACGATAGAGAAAACATTGAACGATGGCTGTTCTCGTGCAACAACAGAACCTGCCCTGTCACGAAGCAGTCCATCTTAGATATGGATCTCACGCCGAACCACACGCTTCGACGTTTGATCCAGGCTTGGTGCACCCTCAATGCCTCGTCCGGGATCGAGCGTATTCCGACTCCCAAGCCTCCCGTTGATAAAATCCGGATCGTCGAACTCCTCTCCGAAGCGAGCCGGTCCCCGCGCAGCCATCTCAAATGCCTTGGAATGCTTCGATCCATTGCTTTCGAAAGCGACAGGAACAAGATTTATCTGGAGTCTGCAGGGGCGATAGAATTCTTGGCTTCGACCTTGAAGTTTAGTAGTGGACACGCCCGAGTGGACGACGACAATGAACGCAGCGTCATGAGCATTGAAGCGGCACTCGAGGTTCTGTTCCATCTAAATCCTTCAGAATCTCACTTTAAAAATCTGGTCAGCAGCGAGGGAATTCAATTCATCCAGTCCTTGATCCGAATCTTGGGGAATGGGAACTACCAATCCCGAGCTTACTCGACAATACTATTAAAATCAGCGTTTGGAGTGGCGGATCCAACCCAATTGATGAATGTGAGAACAGAATTGTTCGCGGAACTCGTGAGAGTGTTGCGAGATAAGATTTCACAGCAAGCTTCAAAGGCAGCGCTGAAGCTAGTAGTGGAGCTGTGTCCGTGGGGGAAGAACAGAATCAAAGCGGTGGAAGGCGGCGTGGGTCTGGTGCTGATAGAGATGCTTCTAGAAGCAACGGAGAGGAGAGCGTGCGAGCTGATTCTCGTAGCGTTGGATCAGCTGTGCGGATGTGCGGAAGGAAGAGCAGAGTTGTTGAAGCACGGTGCAGGGGTGGCGATCGTGTCGAAAAAGATTCTAAGAGTATCACAAGTGGCAACTGATAGAGGGGTGAAGATATTGAGCTGGATCTGTAGGCATTCGGCCAACGCGAGGGTGCTTCAGGAAATGTTGCAGGTGGGCGCAGTGTGTAAGCTGTGTTTGGTGCTTCAAGTGGAGGCGAGCTTGAAGACGAAGGAGAGGGCCAAGGAGGTTCTGAAATTGCACTCCAACACTTGGAGGAATTCCGCCTGTATTCCTGCTCCTTTGCTCCAATCCTATCCTTCCTCTGATTCACTAGACAAGTAG 1254 0.512 MDEIDVPSHFLCPISLQLMTDPVTVRTGITYDRENIERWLFSCNNRTCPVTKQSILDMDLTPNHTLRRLIQAWCTLNASSGIERIPTPKPPVDKIRIVELLSEASRSPRSHLKCLGMLRSIAFESDRNKIYLESAGAIEFLASTLKFSSGHARVDDDNERSVMSIEAALEVLFHLNPSESHFKNLVSSEGIQFIQSLIRILGNGNYQSRAYSTILLKSAFGVADPTQLMNVRTELFAELVRVLRDKISQQASKAALKLVVELCPWGKNRIKAVEGGVGLVLIEMLLEATERRACELILVALDQLCGCAEGRAELLKHGAGVAIVSKKILRVSQVATDRGVKILSWICRHSANARVLQEMLQVGAVCKLCLVLQVEASLKTKERAKEVLKLHSNTWRNSACIPAPLLQSYPSSDSLDK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2304 417 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Prci7g2304 417 SUPERFAMILY ARM repeat 97 369 IPR016024 -
Prci7g2304 417 PANTHER WDSAM1 PROTEIN 3 402 IPR045185 GO:0061630
Prci7g2304 417 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Prci7g2304 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Prci7g2304 417 CDD RING-Ubox_PUB 7 60 IPR045210 -
Prci7g2304 417 SUPERFAMILY RING/U-box 3 77 - -
Prci7g2304 417 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Prci7g2304 417 Gene3D - 93 405 IPR011989 -
Prci7g2304 417 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2304 Prci-Chr7 36295852 36297321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2304 2 410 U-box Gene Family AT2G35930 51.816 6.04e-149 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2304 - - gmx:100778012 582.408