Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2289 ATGGAGGTTCCGGGGTTGGAAGAGAATAAGAAGTCTGAAGTGCATTTGACTTCTGCTGCAGCCTTTGTGGAGGGTGGAATCCAGGATGCCTGTGATGATGCCTGCAGTATATGTCTTGAAGCATTTCATGACAGTGATCCTTCAACAGTGACAAGTTGCAAACATGAGTTTCATCTTCAATGCATTCTAGAATGGTGTCAGAGAAGCTCTCAGTGCCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCAACAAGTCAAGAATTACTTGAAGCAGTGGAAAGAGAGAGAAACATTAGGTTGAATCCTCCTAGAAATACCACAATATTTCATCATCCAGCTCTGGGGGACTTTGAGTTACAACATTTGCCAGTTGGTGCAAATGATGCGGATCTTGAAGAGCGTATTATACAGCACTTAGCTGCTGCTGCTGCAATGGGACGAGCACGCCATATTGCTAGAAGGGAAAGTCAGAGAAGCAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTATTTTCAGCCCATCCTAATTCACCGCCCATGGCTCCTGCCTCTCCAACTCATGGGGCAAATGGTGAACCAGCTTCAGCAATCACTGTTACTGTATCTCCAACTCCTGCCACCGGGGAAGAATCATCACAGTCAACTTCTGTTCCTCTTGTTCAAGCAGACCATGTTTCTGCTTCAGGATCAGGATCTACTGCTCTTGCTGCTGATAACCAAGGATCGTCTTACAACAGTAGGAGGTCTCCTAGTCAGTCTTATCCAAGCAGTCAGGATAGAGCAGGACCATCAGAATTCCAATCATTTTCAGAATCTTTGAAGTCTAGACTAAATGCAGTTTCAACGAGATACAAGGAGTCGATATCCAGGAGCACAAGAGGTTGGAAGGAGAGATGGTTCTCTCGCAACAGCTCTATGTCTGATGTTGGGTCTGAAGTTAGACAAGAGGTGGTTAATGCGGGGATTGCAACTGTGTCACGCATGATGGAACGACTGGATACCAGAGACGACAATAGAAATGATAGCAATCCTACTCATGGCCATGTAGAAGGTGGTCTGGTTGCTGGACCAAATGACCCACATGTTTCAGATGCCGAAGGTGAAAGTCCCTTGAGAGATAATAACACGAAAACATCCTTTGCGGCGGGTTCTAGTTCAAATTAA 1170 0.4581 MEVPGLEENKKSEVHLTSAAAFVEGGIQDACDDACSICLEAFHDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNIRLNPPRNTTIFHHPALGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARRESQRSRSSAQGRPHFLVFSAHPNSPPMAPASPTHGANGEPASAITVTVSPTPATGEESSQSTSVPLVQADHVSASGSGSTALAADNQGSSYNSRRSPSQSYPSSQDRAGPSEFQSFSESLKSRLNAVSTRYKESISRSTRGWKERWFSRNSSMSDVGSEVRQEVVNAGIATVSRMMERLDTRDDNRNDSNPTHGHVEGGLVAGPNDPHVSDAEGESPLRDNNTKTSFAAGSSSN 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2289 389 CDD RING-H2_RHF2A 22 84 - -
Prci7g2289 389 SMART ring_2 35 75 IPR001841 -
Prci7g2289 389 MobiDBLite consensus disorder prediction 227 271 - -
Prci7g2289 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 84 - -
Prci7g2289 389 MobiDBLite consensus disorder prediction 171 196 - -
Prci7g2289 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 84 IPR013083 -
Prci7g2289 389 Pfam Ring finger domain 34 75 IPR001841 -
Prci7g2289 389 SUPERFAMILY RING/U-box 28 83 - -
Prci7g2289 389 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Prci7g2289 389 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Prci7g2289 389 MobiDBLite consensus disorder prediction 374 389 - -
Prci7g2289 389 MobiDBLite consensus disorder prediction 336 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2289 Prci-Chr7 36142138 36147068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2289 32 83 C3H Transcription Factor Family AT4G00335 44.231 1.37e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2289 K19043 - gmx:100814908 577.4