Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2252 ATGCCGGTCGGCATGATGATTCCGGCGAGAAATATGACGTCCGTGATTGGAAGGAACGGCAACGTTGGTGGATTTGGATCACCCTCAAGTCTCACTCTCGGCCAGCCAAACATGATGGAAGGTCAGCTACACCCATTGGACATGGCTCCCAACACCTCCGAGAGCGACGTACCCCGCATCCGAGGAGAAGACTTCGACAGTGCCACCAAGTCCGGCAGTGAAAACCAGGAAGGCGCCTCCGGCGACGACCATGATCCCCGCCCCAAAAAGAAGCGCTACCACCGCCACACGCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGCCCGCATCCAGATGACAAGCAGAGAAAGGAACTGAGCCGAGAATTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAAAACAAGCGAACTCAGATGAAGACCCAACATGAGCGGCAAGAGAACTCACAACTTAGAGCCGAAAATGAGAAGCTTCGAGCAGACAACATGAGGTACAGGGAAGCTCTTAGCAATGCCTCATGTCCAAACTGTGGTGGACCAACCGCCATTGGTGAAATGTCTTTTGATGAGCATCATTTGAGAATGGAAAATGCCCGTCTACGAGAAGAGATTGACAGGATTTCGGCAATTGCTGCAAAGTACGTGGGGAAGCCGGTGGTGAACTATCCACTGCTTCCCCCAACTGTTCCTCCACGTCCACTGGAACTGGGTGTGGGTGGTTTTGGTGAGGACGCATACGGAGGTGGAGATGTTGTTAGGTCTATGAGTGGGCCTACGGATGCTGATAAGCCAATAATAATAGAGCTAGCTGTGGCTGCCATGGAAGAGCTGGTGAGGATGGCACAAATGGGTGATCCCTTATGGCTGACCACTCTTGATGGAACCACCACTGTGCTTAACGAGGATGAATATATCAGAAGTTTCCCTCGTGGTATTGGTCCAAAACCTACTGGATTCAAGTGTGAAGCTTCTCGAGAAACTGCTGTTGTCATCATGGACCATATTAATCTTGTTGAGATTCTCATGGATGTGAATCAATGGTATACAGTGTTCTCAGGGATAGTCTCAAGAGCAATGACTCTTGAAGTATTATCAACAGGGGTGGCTGGGAACTACAACGGAGCCTTGCAAGTGATGACGGCAGAGCTACAAGTACCTACACCTCTGGTGCCATCTCGAGAGAGTTATTTTGTAAGATATTGCAAACAACACGGGGAAGGGACATGGGCAGTGGTGGATGTGTCGTTAGATAATTTGCGCCCTAGTCCTTCACTTAGATGTAGAAGAAGGCCCTCCGGCTGCTTAATTCATGAAATGCCTAATGGCTACTCGAAGGTGACGTGGGTTGAGCACGTAGAAGTGGACGATCGAGGAGTTCATGATCTATACAAGCAGCTCGTCAGCTCTGGACATGCTTTCGGGGCAAAACGTTGGGTGGCTACTTTGGATCGACAATGTGAAAGGCTTGCCAGTTCCATGGCAACCAATATTCCCACTGGTGATGTTGGCGTGATAACCAGCCAAGAAGGGAGGAAGAGTATGCTGAAACTGGCAGAGAGAATGGTGATGAGCTTTTGTGCCGGAGTGGGTGCTTCTACTGCTCACACGTGGACTACACTGTCTGGAACCGGGGCAGACGATGTAAGGGTCATGACCCGTAAGAGTGTGGATGATCCTGGAAGGCCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCAGTTCCTCCTATTAGAGTTTTTGATTTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCGAATGGCGGAGTAGTCCAAGAAATGGCACATATAGCTAATGGTCAGGACACAGGGAATTGTGTATCTCTACTTCGGAGTGCGAATTCCAGCCAAAGCAATATGTTAATACTGCAAGAAAGCTGCAGAGACGCGACGGGGTCGTTTGTGATATATGCACCCGTGGATATAGTTGCAATGAACGTGGTTCTGAATGGAGGGGACCCAGACTACGTGGCCCTTCTTCCTTCTGGATTCGCTATACTGCCGGATGGAACCATGGCACATGGTGGATCTCTCTTGACTGTTGCTTTCCAAATTTTGGTCGACTCAGTTCCGACAGCCAAACTCTCTCTCGGATCTGTTGCCACTGTCAATAATCTCATTGCCTGCACTGTTGAGAGAATCAAGGCTTCTTTGTCCTGTGAAGCTGCCTGA 2226 0.4955 MPVGMMIPARNMTSVIGRNGNVGGFGSPSSLTLGQPNMMEGQLHPLDMAPNTSESDVPRIRGEDFDSATKSGSENQEGASGDDHDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRMENARLREEIDRISAIAAKYVGKPVVNYPLLPPTVPPRPLELGVGGFGEDAYGGGDVVRSMSGPTDADKPIIIELAVAAMEELVRMAQMGDPLWLTTLDGTTTVLNEDEYIRSFPRGIGPKPTGFKCEASRETAVVIMDHINLVEILMDVNQWYTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPTPLVPSRESYFVRYCKQHGEGTWAVVDVSLDNLRPSPSLRCRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSSGHAFGAKRWVATLDRQCERLASSMATNIPTGDVGVITSQEGRKSMLKLAERMVMSFCAGVGASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPIRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGQDTGNCVSLLRSANSSQSNMLILQESCRDATGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTMAHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2252 741 Gene3D - 75 164 - -
Prci7g2252 741 CDD START_ArGLABRA2_like 268 492 - -
Prci7g2252 741 SMART HOX_1 88 151 IPR001356 GO:0003677
Prci7g2252 741 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Prci7g2252 741 FunFam Homeobox-leucine zipper protein GLABRA 2 273 492 - -
Prci7g2252 741 Pfam START domain 274 493 IPR002913 GO:0008289
Prci7g2252 741 SUPERFAMILY Bet v1-like 513 733 - -
Prci7g2252 741 Gene3D - 324 489 IPR023393 -
Prci7g2252 741 MobiDBLite consensus disorder prediction 26 98 - -
Prci7g2252 741 FunFam Homeobox-leucine zipper protein HDG1 75 163 - -
Prci7g2252 741 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Prci7g2252 741 CDD homeodomain 90 148 IPR001356 GO:0003677
Prci7g2252 741 Coils Coil 146 173 - -
Prci7g2252 741 ProSiteProfiles START domain profile. 264 496 IPR002913 GO:0008289
Prci7g2252 741 SMART START_1 273 493 IPR002913 GO:0008289
Prci7g2252 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 87 736 IPR042160 -
Prci7g2252 741 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Prci7g2252 741 SUPERFAMILY Homeodomain-like 77 147 IPR009057 -
Prci7g2252 741 SUPERFAMILY Bet v1-like 264 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2252 Prci-Chr7 35899194 35904655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2252 60 741 Homeobox Transcription Factor Family AT1G05230 79.454 0.0 1134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci7g2252 START 3.6e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2252 K09338 - cave:132180993 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2252 7 35899194 35904655 Prci6g1050 6 7313857 7316068 CCT
Prci7g2252 7 35899194 35904655 Prci7g2252 7 35899194 35904655 ECH