Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2227 ATGGACATCGACTCCTCACACACCCCCAATTGGCTCTATGATTATGGCTTTGACGTCCCTGTCGCCGGAGCTGATTTGCCGGTCGTCTCTTCTGGCGGTTTCAACTGGGTGTCTCCTACTTTTCACGGTTCTTCCGATACGAGCTTGGACCTGGATTACTCACTGGAGAATTCGACTTTCCTGGAAAGTGGCCCTTCAAAGCGGTTGAAGTCTGAATCATGTGCATCTGGCTCCAAGGCATGCCGTGAGAAACTTAGGAGGGATAGACTGAATGAGAGGTTCCTGGAATTGAGTTCTATCTTGGAGCCTGGTAAGCTGCCCAAGATGGATAAGACTGCTATATTAAGTGATGCAGTTCGAATGTTAACAGAATTACGAACTGAAGCCCAGAAGCTGAAGGAAACAAACGATGAATTGCTTGAAAAAATCAAGGAACTGAAGGCAGAGAAGAACGAGCTTCGTGATGAAAAGAACAGGCTGAAGATGGATAAAGAAAAGCTGGAGCAACGGGTCAAAGGGATGAATGCACAGCCAACCTATCTTTCTCATCCTTCTGCTGCATTTAGTGCTCAAGGACAAACTGCCAGCCACAAGCTGATACCATTTGTTGGTTATCCTGGAATCGGCATGTGGCAGTTTTTGCCACCTGCTGCGGTTGATACATCTCGGGATCATCTGCTTCGCCCTCCTGTCGCTTAA 699 0.4764 MDIDSSHTPNWLYDYGFDVPVAGADLPVVSSGGFNWVSPTFHGSSDTSLDLDYSLENSTFLESGPSKRLKSESCASGSKACREKLRRDRLNERFLELSSILEPGKLPKMDKTAILSDAVRMLTELRTEAQKLKETNDELLEKIKELKAEKNELRDEKNRLKMDKEKLEQRVKGMNAQPTYLSHPSAAFSAQGQTASHKLIPFVGYPGIGMWQFLPPAAVDTSRDHLLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2227 232 SMART finulus 80 131 IPR011598 GO:0046983
Prci7g2227 232 CDD bHLH_AtILR3_like 79 154 - -
Prci7g2227 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Prci7g2227 232 Coils Coil 115 177 - -
Prci7g2227 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 124 178 - -
Prci7g2227 232 Gene3D - 67 123 IPR036638 GO:0046983
Prci7g2227 232 PANTHER BHLH TRANSCRIPTION FACTOR 6 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Prci7g2227 232 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Prci7g2227 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 150 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2227 Prci-Chr7 35762874 35766184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2227 5 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.202 2.89e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci7g2227 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2227 - - gmx:100803143 305.834