Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2226 ATGGACATCGACTCCTCACACACCCCCAATTGGCTCTATGATTATGGCTTTGACGTCCCTGTCGCCGGAGCTGATTTGCCGGTCGTCTCTTCTGGCGGTTTCAACTGGGTGTCTCCTACTTTTCACGGTTCTTCCGATACGAGGTTGAAGTCTGAATCATGTGCATCTGGCTCCAAGGCATGCCGTGAGAAACTTAGGAGGGATAGACTGAATGAGAGGTTCCTGGAATTGAGTTCTATCTTGGAGCCTGGTAAGCTGCCCAAGATGGATAAGACTGCTATATTAAGTGATGCAGTTCGAATGTTAACAGAATTACGAACTGAAGCCCAGAAGCTGAAGGAAACAAACGATGAATTGCTTGAAAAAATCAAGGAACTGAAGGCAGAGAAGAACGAGCTTCGTGATGAAAAGAACAGGCTGAAGATGGATAAAGAAAAGCTGGAGCAACGGGTCAAAGGGATGAATGCACAGCCAACCTATCTTTCTCATCCTTCTGCTGCATTTAGTGCTCAAGGACAAACTGCCAGCCACAAGCTGATACCATTTGTTGGTTATCCTGGAATCGGCATGTGGCAGTTTTTGCCACCTGCTGCGGTTGATACATCTCGGGATCATCTGCTTCGCCCTCCTGTCGCTTAA 639 0.4742 MDIDSSHTPNWLYDYGFDVPVAGADLPVVSSGGFNWVSPTFHGSSDTRLKSESCASGSKACREKLRRDRLNERFLELSSILEPGKLPKMDKTAILSDAVRMLTELRTEAQKLKETNDELLEKIKELKAEKNELRDEKNRLKMDKEKLEQRVKGMNAQPTYLSHPSAAFSAQGQTASHKLIPFVGYPGIGMWQFLPPAAVDTSRDHLLRPPVA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2226 212 Gene3D - 47 103 IPR036638 GO:0046983
Prci7g2226 212 PANTHER BHLH TRANSCRIPTION FACTOR 44 212 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Prci7g2226 212 CDD bHLH_AtILR3_like 59 134 - -
Prci7g2226 212 Coils Coil 95 157 - -
Prci7g2226 212 Gene3D arf6 gtpase in complex with a specific effector, jip4 104 158 - -
Prci7g2226 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 105 IPR011598 GO:0046983
Prci7g2226 212 Pfam Helix-loop-helix DNA-binding domain 58 105 IPR011598 GO:0046983
Prci7g2226 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 130 IPR036638 GO:0046983
Prci7g2226 212 SMART finulus 60 111 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2226 Prci-Chr7 35762850 35766184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2226 5 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 53.448 4.13e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci7g2226 HLH 9.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2226 - - gmx:100803143 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2226 7 35762850 35766184 Prci7g2226 7 35762850 35766184 ECH