Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2181 ATGGTGAGGAGTCCCTTTTACGACAAAAACGGAGTTAAGAAAGGTGCGTGGAGTAAAGAAGAGGACCACAAACTCAGAACCTATGTTCTCAGACATGGTCATGCCAATTGGCGTCAACTCCCCCAGCTTGCAGGTTTAGCAAGGTGCGGAAAAAGTTGCAGACTTCGTTGGATGAACTACCTGCGCCCAAATCTAAAGCACGGCAACTACACTCCAGAGGAGGAGCAACTAATCATCAAATGCCACCGACAACTTGGGAATAAGTGGTCATTGATTGCTGAGAAACTTCCAGGACGAACGGATAATGATATAAAGAACCACTGGCACAGCCACCTAAAGAAGAACTTAAACCAGAGTGACGCTGAAGAGGGGGTAAAATATTTGAAGACAGCCGAATATAAAGAATCCGAACGCCCACGTGAGTTTGTGGGTTCTGAGTCACGAAGTCACCATATTCTGGAAAGCTCATGGGCACGGCCCACTTCTTCGGACACGTGCTACACCCAAGAGAACCACTCAGACTCGAGCGTTTCACTCCAACAATCCACCCTCAAGTCTTACCGGGAAGATCAGGACAGTGTAGCTTCCTGGGAAACCTCACAAGAACTGATGACCAGCGAATTTTGGAGTAGACCATTTTTAGTAGAAAATACTTGTGGTTTGGACACACCCCCCTCAATGTTTTGGTACCCTTACGAGGTTACAGATTTGAGTCATGACCTGCTGCTAGACTGGCAAATACAAAATTGTTAA 753 0.4648 MVRSPFYDKNGVKKGAWSKEEDHKLRTYVLRHGHANWRQLPQLAGLARCGKSCRLRWMNYLRPNLKHGNYTPEEEQLIIKCHRQLGNKWSLIAEKLPGRTDNDIKNHWHSHLKKNLNQSDAEEGVKYLKTAEYKESERPREFVGSESRSHHILESSWARPTSSDTCYTQENHSDSSVSLQQSTLKSYREDQDSVASWETSQELMTSEFWSRPFLVENTCGLDTPPSMFWYPYEVTDLSHDLLLDWQIQNC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2181 250 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci7g2181 250 CDD SANT 69 112 IPR001005 -
Prci7g2181 250 CDD SANT 16 61 IPR001005 -
Prci7g2181 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci7g2181 250 Gene3D - 69 141 - -
Prci7g2181 250 Gene3D - 7 67 - -
Prci7g2181 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 193 - -
Prci7g2181 250 FunFam Transcription factor RAX3 7 67 - -
Prci7g2181 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci7g2181 250 SMART sant 66 114 IPR001005 -
Prci7g2181 250 SMART sant 13 63 IPR001005 -
Prci7g2181 250 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci7g2181 250 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci7g2181 250 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Prci7g2181 250 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2181 Prci-Chr7 35495267 35497113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2181 1 218 MYB Transcription Factor Family AT2G31180 42.202 1.90e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci7g2181 Myb_DNA-binding 7.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2181 K09422 - gmx:100782270 249.21