Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2125 ATGCAAATGGATCAGCCTCGATTTCAAGCTCCTACGCCCACCAAGATCGAAAGAAGGCTCATAGAGAAAAACCGAAGAAACCAGATGAAGATCCTTTACGCCAAACTCAACTCTCTTCTCCCAAACTTCAACCCTAAGCAAATGATTCCGCTGCCTGATCAGATAGACGAGGCAATAAACTATATAAAGAGTTTAGAGGCAAAAGTGAAGATGGCTCAGGAGAAGAAAGAGAGGTTCATGGGAAAGAAAAGGTCACATGCTTGCTGCAGCTCTGGTTCTTTTGAGACCATAAAGAGAAGCCTGAATTCACCACAGATTCAGATTCATGAAATGGGTTCGTCACTTGAAGTAGTTCTGATTAATGGTTTGGATAATCAGTTCACTTTCTATGAGATTATTCGCATACTGCACGAAGAGGAAGTGGAGGTCGTAAGTGCCAGTTCCTCACTCGCCGGAGATTCAATGCTAAACATTGTGCACGCGCAGATTCAGCCGTCTTTGTATGAATTCGGAGCCACCAAAATAAGTGAGAGATTGAAAAGGTTTGTGTATGGATCGGCCAGTGATGTGGAAATACAGCCAGCCGAGCTGCAAAATTATTTCCAAATTGGTACGGTTACATGGGACTACTAA 633 0.4329 MQMDQPRFQAPTPTKIERRLIEKNRRNQMKILYAKLNSLLPNFNPKQMIPLPDQIDEAINYIKSLEAKVKMAQEKKERFMGKKRSHACCSSGSFETIKRSLNSPQIQIHEMGSSLEVVLINGLDNQFTFYEIIRILHEEEVEVVSASSSLAGDSMLNIVHAQIQPSLYEFGATKISERLKRFVYGSASDVEIQPAELQNYFQIGTVTWDY 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2125 210 Gene3D - 10 89 IPR036638 GO:0046983
Prci7g2125 210 SMART finulus 19 71 IPR011598 GO:0046983
Prci7g2125 210 Pfam Helix-loop-helix DNA-binding domain 17 66 IPR011598 GO:0046983
Prci7g2125 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 85 IPR036638 GO:0046983
Prci7g2125 210 FunFam Transcription factor bHLH162 7 91 - -
Prci7g2125 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Prci7g2125 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 14 184 - -
Prci7g2125 210 Coils Coil 55 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2125 Prci-Chr7 35077185 35078044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2125 16 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.571 7.49e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci7g2125 HLH 9.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2125 - - gmx:100817883 244.588