Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2122 ATGTCACTGTACGCTTTCAAGGAAACTCTCAAGCCTTGCACAAGCCAACCGTCATCTACATCGGTGAGCCGAAAGCAGTCTTCGGTTTTCCGAGATTCCGACCTCCCAATCCCTAGGAAACCCCCAAAATCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTAATTCAGCCTCACAATTCACCTAAGCGGGAAAGAGAACCGAAAAGTAGTGAGGTCGTGGATAACGACGAAGAAGAGGACGAGGAGGAGGAACCAGAATTGAAGAGGGAGAAATTCGGTGGAGCTAAATCGTGTCAGTTTCAGTTCGATCAAACTGGACCCTTCGAACCTCTGGTCCTGTCTTCGGATGGAGAAGTTCCAGTGGTACAGGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGAGCGGGAGTGAAGTTTCTGTATAGTTTGTTTAAAAACAATCATGGAGGCATTCTTGGTGATGACATGGGCCTTGGGAAGACCATTCAAATGATAGCATTTCTTGCTGCTGTCTTTGGTAAAGATGGAGAATATATGCCAAAGGGAAACCACGCAATGAAAAGAGATCCTGTATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTCAGTGTTTCCATTTATCACGGTGCAAACAGAGATCTAATATATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATTCAGAATTCATGGTAGCATATTGTCAAAAATCAAATGGGACATTGTGGTTATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCAAAACTCTACAGAGCATGTTCAGAAATAAAAACCCCAAGACGTTTTGGTCTTACTGGAACGATGATGCAAAATAAGATCATGGAACTGTTTAATCTATTTGACTGGGTTGTTCCAGGATCCCTGGGAACAAGGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTAGAAATTGCCAACAAGCGAAAACAGCACCTTGTGACAGTTCTTCAGAAATACATGTTAAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAAGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTGCAAAAACGAGCATACAGGAGAATGTTACAACTTCCTGATATCCAATGCCTTATTAATAAGGACTTGCCTTGTAGTTGTGGAAGCCCACTCACACAAGTTGAATGTTGTAAGAGGATTGTATCAGATGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTTAAGATCCAACAGATAAGCAATCACCTTGAGCTGATAAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGAAAAGATGCAGAGTTTGCTGGTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAGCACGCAGAATGAGAATTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGAGAGCACTTGAAAAACTTCTGTTTTCATGGATCTCTCATGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTGGACATACTAGAGAAATTTCTTATAAGAAAAGGCTACAGCTTCTCAAGACTTGATGGTTCTACCCCAACTAATTTACGTCAATCACTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGGGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACAGGTCATTCCGCTTTGGGCAGAAACGACATGTTGTGGTATTCCGCCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTATCAAACATTGCCATCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGTGTCCAGCTTTCATGCAGGATTGCAAAGAATTTCAAGGAGAACTTTTTGGAATTTGCAATTTGTTTCGAGATTTATCTGACAAGCTTTTTACAAGTGAAATAA 2160 0.4236 MSLYAFKETLKPCTSQPSSTSVSRKQSSVFRDSDLPIPRKPPKSSLTQQLRRLQDPLAPPLIQPHNSPKREREPKSSEVVDNDEEEDEEEEPELKREKFGGAKSCQFQFDQTGPFEPLVLSSDGEVPVVQVPASINCRLLEHQRAGVKFLYSLFKNNHGGILGDDMGLGKTIQMIAFLAAVFGKDGEYMPKGNHAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIYDKLEAHGVEILITSFDTFRIHGSILSKIKWDIVVIDEAHRLKNEKSKLYRACSEIKTPRRFGLTGTMMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQHLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSDGIIWPYLHRDNPDGCDSCPFCLVLPCLVKIQQISNHLELIKPNPKDDPDKQRKDAEFAGAVFGPDIDLVGGSTQNENFMGLSDVKHCGKMRALEKLLFSWISHGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAISGKMEKRYFEGVQLSCRIAKNFKENFLEFAICFEIYLTSFLQVK 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2122 719 SMART helicmild6 557 640 IPR001650 -
Prci7g2122 719 MobiDBLite consensus disorder prediction 9 30 - -
Prci7g2122 719 Gene3D - 117 371 IPR038718 -
Prci7g2122 719 SMART ultradead3 135 330 IPR014001 -
Prci7g2122 719 MobiDBLite consensus disorder prediction 1 98 - -
Prci7g2122 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 322 IPR014001 -
Prci7g2122 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 683 IPR027417 -
Prci7g2122 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 372 IPR027417 -
Prci7g2122 719 Pfam SNF2-related domain 156 411 IPR000330 GO:0005524|GO:0140658
Prci7g2122 719 PANTHER SNF2/RAD54 FAMILY MEMBER 16 690 - -
Prci7g2122 719 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 120 371 - -
Prci7g2122 719 Gene3D - 384 701 IPR027417 -
Prci7g2122 719 CDD SF2_C_SNF 522 651 - -
Prci7g2122 719 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
Prci7g2122 719 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2122 Prci-Chr7 35030458 35036465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2122 529 676 RAD5 or RAD16-like Gene Family AT5G43530 38.514 3.50e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci7g2122 SNF2_N 9.8e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2122 K20098 - gmx:100781003 1128.24