Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2121 ATGTCACTGTACGCTTTCAAGGAAACTCTCAAGCCTTGCACAAGCCAACCGTCATCTACATCGGTGAGCCGAAAGCAGTCTTCGGTTTTCCGAGATTCCGACCTCCCAATCCCTAGGAAACCCCCAAAATCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTAATTCAGCCTCACAATTCACCTAAGCGGGAAAGAGAACCGAAAAGTAGTGAGGTCGTGGATAACGACGAAGAAGAGGACGAGGAGGAGGAACCAGAATTGAAGAGGGAGAAATTCGGTGGAGCTAAATCGTGTCAGTTTCAGTTCGATCAAACTGGACCCTTCGAACCTCTGGTCCTGTCTTCGGATGGAGAAGTTCCAGTGGTACAGGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGAGCGGGAGTGAAGTTTCTGTATAGTTTGTTTAAAAACAATCATGGAGGCATTCTTGGTGATGACATGGGCCTTGGGAAGACCATTCAAATGATAGCATTTCTTGCTGCTGTCTTTGGTAAAGATGGAGAATATATGCCAAAGGGAAACCACGCAATGAAAAGAGATCCTGTATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTCAGTGTTTCCATTTATCACGGTGCAAACAGAGATCTAATATATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATTCAGAATTCATGGTAGCATATTGTCAAAAATCAAATGGGACATTGTGGTTATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCAAAACTCTACAGAGCATGTTCAGAAATAAAAACCCCAAGACGTTTTGGTCTTACTGGAACGATGATGCAAAATAAGATCATGGAACTGTTTAATCTATTTGACTGGGTTGTTCCAGGATCCCTGGGAACAAGGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTAGAAATTGCCAACAAGCGAAAACAGCACCTTGTGACAGTTCTTCAGAAATACATGTTAAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAAGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTGCAAAAACGAGCATACAGGAGAATGTTACAACTTCCTGATATCCAATGCCTTATTAATAAGGACTTGCCTTGTAGTTGTGGAAGCCCACTCACACAAGTTGAATGTTGTAAGAGGATTGTATCAGATGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTTAAGATCCAACAGATAAGCAATCACCTTGAGCTGATAAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGAAAAGATGCAGAGTTTGCTGGTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAGCACGCAGAATGAGAATTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGAGAGCACTTGAAAAACTTCTGTTTTCATGGATCTCTCATGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTGGACATACTAGAGAAATTTCTTATAAGAAAAGGCTACAGCTTCTCAAGACTTGATGGTTCTACCCCAACTAATTTACGTCAATCACTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGGGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACAGGTCATTCCGCTTTGGGCAGAAACGACATGTTGTGGTATTCCGCCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTATCAAACATTGCCATCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGTGTCCAGGATTGCAAAGAATTTCAAGGAGAACTTTTTGGAATTTGCAATTTGTTTCGAGATTTATCTGACAAGCTTTTTACAAGTGAAATAATTCATTTGCATGATAAGGAAGGAAACGAACATGAGCATAGAATAGAAAAGGAAGGAAAACCTGTTCCTTCAGAAGAAGCTGATATTTTAGTATCAGAGTCTGGGAACAGGTTATCGACCAATTACAAGAGGACATCAACAAGTGAAGCAGATCTGGAAGATCTTGGCGTTGTCTATGCTCACAGGAATGAAGACATTGTCAACTTTGGCCCTGGCATTCAAGGGAAGACAGAGACCAGCATCCCTCACGGTGAAAGCCAGCGCATACCCGTTGTCCCGAGAGAAGGATTTGAGCGTGTAGCTGAAAAACATGAAGTTCCTATCATCAGTGAGTGGAAGAGAACCCAATATAGGCTGCTCGCTCAGTCTAGAGGCATGGGAGAGCTTGAATTTAGCTTGTGGTTATTATCAGCGACTCCAATGGAAAGAGAGGAAGTGCTTCTAGACTACCTAACCTCGACGCCAAAGGGTAAATCACCGTCCTCTTCTTGCCAGTGA 2646 0.4293 MSLYAFKETLKPCTSQPSSTSVSRKQSSVFRDSDLPIPRKPPKSSLTQQLRRLQDPLAPPLIQPHNSPKREREPKSSEVVDNDEEEDEEEEPELKREKFGGAKSCQFQFDQTGPFEPLVLSSDGEVPVVQVPASINCRLLEHQRAGVKFLYSLFKNNHGGILGDDMGLGKTIQMIAFLAAVFGKDGEYMPKGNHAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIYDKLEAHGVEILITSFDTFRIHGSILSKIKWDIVVIDEAHRLKNEKSKLYRACSEIKTPRRFGLTGTMMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQHLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSDGIIWPYLHRDNPDGCDSCPFCLVLPCLVKIQQISNHLELIKPNPKDDPDKQRKDAEFAGAVFGPDIDLVGGSTQNENFMGLSDVKHCGKMRALEKLLFSWISHGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAISGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIHLHDKEGNEHEHRIEKEGKPVPSEEADILVSESGNRLSTNYKRTSTSEADLEDLGVVYAHRNEDIVNFGPGIQGKTETSIPHGESQRIPVVPREGFERVAEKHEVPIISEWKRTQYRLLAQSRGMGELEFSLWLLSATPMEREEVLLDYLTSTPKGKSPSSSCQ 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2121 881 Gene3D - 117 371 IPR038718 -
Prci7g2121 881 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Prci7g2121 881 PANTHER SNF2/RAD54 FAMILY MEMBER 16 796 - -
Prci7g2121 881 SMART helicmild6 557 640 IPR001650 -
Prci7g2121 881 MobiDBLite consensus disorder prediction 9 30 - -
Prci7g2121 881 SMART ultradead3 135 330 IPR014001 -
Prci7g2121 881 MobiDBLite consensus disorder prediction 1 98 - -
Prci7g2121 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 322 IPR014001 -
Prci7g2121 881 Pfam SNF2-related domain 156 411 IPR000330 GO:0005524|GO:0140658
Prci7g2121 881 Gene3D - 384 715 IPR027417 -
Prci7g2121 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 372 IPR027417 -
Prci7g2121 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 693 IPR027417 -
Prci7g2121 881 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 120 371 - -
Prci7g2121 881 CDD SF2_C_SNF 522 651 - -
Prci7g2121 881 MobiDBLite consensus disorder prediction 724 743 - -
Prci7g2121 881 MobiDBLite consensus disorder prediction 724 740 - -
Prci7g2121 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2121 Prci-Chr7 35029265 35036463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2121 159 670 RAD5 or RAD16-like Gene Family AT1G02670 24.645 1.04e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci7g2121 SNF2_N 1.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2121 K20098 - gmx:100781003 1325.46