Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2120 ATGTCACTGTACGCTTTCAAGGAAACTCTCAAGCCTTGCACAAGCCAACCGTCATCTACATCGGTGAGCCGAAAGCAGTCTTCGGTTTTCCGAGATTCCGACCTCCCAATCCCTAGGAAACCCCCAAAATCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTAATTCAGCCTCACAATTCACCTAAGCGGGAAAGAGAACCGAAAAGTAGTGAGGTCGTGGATAACGACGAAGAAGAGGACGAGGAGGAGGAACCAGAATTGAAGAGGGAGAAATTCGGTGGAGCTAAATCGTGTCAGTTTCAGTTCGATCAAACTGGACCCTTCGAACCTCTGGTCCTGTCTTCGGATGGAGAAGTTCCAGTGGTTCCTGCATCTATCAACTGCAGACTGCTTGAACATCAAAGAGCGGGAGTGAAGTTTCTGTATAGTTTGTTTAAAAACAATCATGGAGGCATTCTTGGTGATGACATGGGCCTTGGGAAGACCATTCAAATGATAGCATTTCTTGCTGCTGTCTTTGGTAAAGATGGAGAATATATGCCAAAGGGAAACCACGCAATGAAAAGAGATCCTGTATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCTAAATGGGCAAACTTCAGTGTTTCCATTTATCACGGTGCAAACAGAGATCTAATATATGATAAATTGGAAGCACATGGAGTGGAGATACTTATTACCAGTTTTGACACATTCAGAATTCATGGTAGCATATTGTCAAAAATCAAATGGGACATTGTGGTTATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCAAAACTCTACAGAGCATGTTCAGAAATAAAAACCCCAAGACGTTTTGGTCTTACTGGAACGATGATGCAAAATAAGATCATGGAACTGTTTAATCTATTTGACTGGGTTGTTCCAGGATCCCTGGGAACAAGGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTAGAAATTGCCAACAAGCGAAAACAGCACCTTGTGACAGTTCTTCAGAAATACATGTTAAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGAAAAGAAGATAATGTTGTGTTCTGTGCCATGAGTGAATTGCAAAAACGAGCATACAGGAGAATGTTACAACTTCCTGATATCCAATGCCTTATTAATAAGGACTTGCCTTGTAGTTGTGGAAGCCCACTCACACAAGTTGAATGTTGTAAGAGGATTGTATCAGATGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGTCCCTTTTGCCTTGTCCTTCCTTGCCTTGTTAAGATCCAACAGATAAGCAATCACCTTGAGCTGATAAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGAAAAGATGCAGAGTTTGCTGGTGCTGTCTTTGGCCCTGATATTGATTTGGTGGGTGGGAGCACGCAGAATGAGAATTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGAGAGCACTTGAAAAACTTCTGTTTTCATGGATCTCTCATGGTGATAAAATTCTTTTGTTTAGCTATTCTGTAAGAATGCTGGACATACTAGAGAAATTTCTTATAAGAAAAGGCTACAGCTTCTCAAGACTTGATGGTTCTACCCCAACTAATTTACGTCAATCACTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGGGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCAAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTACAGGCACAGGACAGGTCATTCCGCTTTGGGCAGAAACGACATGTTGTGGTATTCCGCCTTCTTGCAGCTGGTTCACTTGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTATCAAACATTGCCATCTCTGGAAAAATGGAAAAGCGTTATTTTGAAGGTGTCCAGGATTGCAAAGAATTTCAAGGAGAACTTTTTGGAATTTGCAATTTGTTTCGAGATTTATCTGACAAGCTTTTTACAAGTGAAATAATTCATTTGCATGATAAGGAAGGAAACGAACATGAGCATAGAATAGAAAAGGAAGGAAAACCTGTTCCTTCAGAAGAAGCTGATATTTTAGTATCAGAGTCTGGGAACAGGTTATCGACCAATTACAAGAGGACATCAACAAGTGAAGCAGATCTGGAAGATCTTGGCGTTGTCTATGCTCACAGGAATGAAGACATTGTCAACTTTGGCCCTGGCATTCAAGGGAAGACAGAGACCAGCATCCCTCACGGTGAAAGCCAGCGCATACCCGTTGTCCCGAGAGAAGGATTTGAGCGTGTAGCTGAAAAACATGAAGTTCCTATCATCAGTGAGTGGAAGAGAACCCAATATAGGCTGCTCGCTCAGTCTAGAGGCATGGGAGAGCTTGAATTTAGCTTGTGGTTATTATCAGCGACTCCAATGGAAAGAGAGGAAGTGCTTCTAGACTACCTAACCTCGACGCCAAAGGGTAAATCACCGTCCTCTTCTTGCCAGTGA 2640 0.4292 MSLYAFKETLKPCTSQPSSTSVSRKQSSVFRDSDLPIPRKPPKSSLTQQLRRLQDPLAPPLIQPHNSPKREREPKSSEVVDNDEEEDEEEEPELKREKFGGAKSCQFQFDQTGPFEPLVLSSDGEVPVVPASINCRLLEHQRAGVKFLYSLFKNNHGGILGDDMGLGKTIQMIAFLAAVFGKDGEYMPKGNHAMKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIYDKLEAHGVEILITSFDTFRIHGSILSKIKWDIVVIDEAHRLKNEKSKLYRACSEIKTPRRFGLTGTMMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQHLVTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSDGIIWPYLHRDNPDGCDSCPFCLVLPCLVKIQQISNHLELIKPNPKDDPDKQRKDAEFAGAVFGPDIDLVGGSTQNENFMGLSDVKHCGKMRALEKLLFSWISHGDKILLFSYSVRMLDILEKFLIRKGYSFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAISGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDKLFTSEIIHLHDKEGNEHEHRIEKEGKPVPSEEADILVSESGNRLSTNYKRTSTSEADLEDLGVVYAHRNEDIVNFGPGIQGKTETSIPHGESQRIPVVPREGFERVAEKHEVPIISEWKRTQYRLLAQSRGMGELEFSLWLLSATPMEREEVLLDYLTSTPKGKSPSSSCQ 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2120 879 Gene3D - 120 369 IPR038718 -
Prci7g2120 879 SMART helicmild6 555 638 IPR001650 -
Prci7g2120 879 MobiDBLite consensus disorder prediction 9 30 - -
Prci7g2120 879 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 117 369 - -
Prci7g2120 879 CDD SF2_C_SNF 520 649 - -
Prci7g2120 879 MobiDBLite consensus disorder prediction 1 98 - -
Prci7g2120 879 MobiDBLite consensus disorder prediction 722 741 - -
Prci7g2120 879 Gene3D - 382 713 IPR027417 -
Prci7g2120 879 SMART ultradead3 133 328 IPR014001 -
Prci7g2120 879 MobiDBLite consensus disorder prediction 722 738 - -
Prci7g2120 879 Pfam SNF2-related domain 154 409 IPR000330 GO:0005524|GO:0140658
Prci7g2120 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 682 IPR001650 -
Prci7g2120 879 PANTHER SNF2/RAD54 FAMILY MEMBER 16 794 - -
Prci7g2120 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 691 IPR027417 -
Prci7g2120 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 320 IPR014001 -
Prci7g2120 879 Pfam Helicase conserved C-terminal domain 526 638 IPR001650 -
Prci7g2120 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2120 Prci-Chr7 35029265 35036464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2120 157 668 RAD5 or RAD16-like Gene Family AT1G02670 24.645 1.23e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci7g2120 SNF2_N 1.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2120 K20098 - gmx:100781003 1316.98