Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2113 ATGGATGAGATTAAAGCAGAGACGGTGGTGAAGAGGGAGGCCTTGGGGGATTACGATCACGAGGAGAAAAATGGATTCTTGTTGGGGGAAGAAGACCAGAGGAAGAAAGTGTCCGTGAAGAAAGGGTCTGCTGGCGGCGGCGGAGGGAGTGGTATGCGGTGTTGCCAGGCGGAGAACTGCTTGGCGGAGCTCAGTGGTGCGAAGCCGTATCACAAGAGGCACAAGGTGTGCGAGTATCATGCCAAGGCTCAGGAAGTAATCGTGTGCGGCATCCGACAACGTTTTTGTCAGCAATGCAGCAGGTTCGGGGAGTTTCGGCTTTTGATTCCATGA 333 0.5405 MDEIKAETVVKREALGDYDHEEKNGFLLGEEDQRKKVSVKKGSAGGGGGSGMRCCQAENCLAELSGAKPYHKRHKVCEYHAKAQEVIVCGIRQRFCQQCSRFGEFRLLIP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2113 110 Gene3D - 51 106 IPR036893 GO:0003677|GO:0005634
Prci7g2113 110 Pfam SBP domain 55 104 IPR004333 GO:0003677
Prci7g2113 110 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 102 IPR044817 GO:0003677
Prci7g2113 110 ProSiteProfiles Zinc finger SBP-type profile. 52 110 IPR004333 GO:0003677
Prci7g2113 110 SUPERFAMILY SBT domain 53 104 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2113 Prci-Chr7 34995665 34996825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2113 39 102 SBP-box Gene Family AT3G60030 62.500 4.77e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci7g2113 SBP 3.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2113 - - qsa:O6P43_028828 112.079