Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g2108 ATGAGCAGCGTCTGTGCTGACCAGCACAAGTTCCATCCCTTCTCCCCTAAGAAGTCCCTCCTCGACATCCCTCCCCGCAAGCTCCTCACTCGCCGTTCCGCCGCCGCCGCCGCCGCCATCCACGACCCCGACATGTTCCCCGACTCCCCCTGCTTTTCCTCTTCCGACGAGGCTTTCCTTCGCAAGTTTCTCCCCCGCAACAACCTCAACGCCGACTCCGACTCCGACGACTCTGATCTCTATTCCTCTGATCACTTCCGCATGTACGAGTTCAAGGTACGCCGATGCACCCGCAGCCGCAGCCATGACTGGACCGACTGCCCCTTCGCTCACCCCGGTGAGAAAGCTCGCCGCCGAGACCCCCGCCGGTATCACTACTCCGGTACTGTCTGCCCCGAGTATCGCCGCGGGGGGTGCAGCCGCGGTGATGGCTGCGAGTTCGCGCACGGCGTCTTCGAGTGTTGGCTTCACCCTGCAAGGTACCGAACTGAGGCTTGTAAAGATGGCAAGAATTGCAAGCGAAAGGTGTGCTTCTTCGCTCACACTCCTCGCCAGCTGAGAATTTTGCCTGTTAATTCTCACTCCCATAGTTCTTCGTCGGCCGACCATCACGCTTCGTGCAAGAATCATAACAAATTCATGAACCCCGCCTCGGGATCCAAGAATTGCTGCTTGTTTTGCCATCACTGCTCTGCTGGTTCCACTTCCTCTCCGACGTCCACGTTGTTTGGGATGTCTCACATGTCGCCGCCACTTTCACCGTCGTCGTCCCCTGTTTCACCTCCTCTTTCTCCGGTGAAACTCAGGTCAACCGCGAACGGACTGTCGCCAATCTCTCGATACTGTGACAGACTCCCAGGATGCGAGACGTCTAGTAGGTTGGTGAATAATCAGGGGGTGGTGAGCTACAAAGAAGCTCTCACAGAATTAATGAGCTCCTTGGAGGGTCTGAATTTCATGGAAGCTAATGCTTCGCCTGTTTCTGCCACGAAATCCCAAAACCTGCCTTGGCTCGACATGTCTTCAATTAACTGTGAAGACCAGCAGCAGCAGTTCATTCTTTCACCCGCCACTTCTTTTAGCTGCGAAGATCAGCAGCAACAGTTCATTCTTTCGCCATCCGCTCACACCCCAACAACAACCTCTGTTTCTTCAAGCTTCTCCAATGGGAAGTTATATGCGAACAGCACGTTCCTCAGCAGTGAGAACAGGGTTGTTTCAAACGATAACGGGTCCGTTTGCTCAGCCCCGGATCTCGGATGGGTCAACGATCTGCTGATGTAG 1284 0.5522 MSSVCADQHKFHPFSPKKSLLDIPPRKLLTRRSAAAAAAIHDPDMFPDSPCFSSSDEAFLRKFLPRNNLNADSDSDDSDLYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSHSHSSSSADHHASCKNHNKFMNPASGSKNCCLFCHHCSAGSTSSPTSTLFGMSHMSPPLSPSSSPVSPPLSPVKLRSTANGLSPISRYCDRLPGCETSSRLVNNQGVVSYKEALTELMSSLEGLNFMEANASPVSATKSQNLPWLDMSSINCEDQQQQFILSPATSFSCEDQQQQFILSPSAHTPTTTSVSSSFSNGKLYANSTFLSSENRVVSNDNGSVCSAPDLGWVNDLLM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g2108 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
Prci7g2108 427 PANTHER UNKEMPT FAMILY MEMBER 53 426 IPR045234 -
Prci7g2108 427 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Prci7g2108 427 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Prci7g2108 427 FunFam Zinc finger CCCH domain-containing protein 66 83 151 - -
Prci7g2108 427 Gene3D - 125 189 - -
Prci7g2108 427 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g2108 Prci-Chr7 34977520 34979343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g2108 77 187 C2H2 Transcription Factor Family AT5G07500 68.468 5.39e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci7g2108 zf-CCCH 7.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g2108 K23047 - qsa:O6P43_000756 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g2108 7 34977520 34979343 Prci7g2108 7 34977520 34979343 ECH