LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci7g1964	ATGACGAAGCCTGCTTCCGACGATCAAAAGAACGGATTGAAGAAAGGCCCGTGGACCCCTGAAGAAGATCAGAAGCTCATCGATTACATTCATGAACATGGACACGGAAAATGGCGTACTCTTCCCAAGAATGCTGGACTCAAGAGATGTGGAAAGAGTTGCCGTCTGCGCTGGACAAATTACTTGAGGCCAGACATTAAGAGAGGTAGATTCTCTTTCGGGGAAGAAGAAACCATCATCCAGTTACACAGTGTTCTGGGCAACAAGTGGTCCACCATTGCCGCTAGCTTGCCGGGAAGAACGGATAATGAGATCAAGAATTATTGGAACACCCATATCAAGAAGAAGCTACTGAAGATGGGGATCGATCCAGTGACTCACACACCGTGCTTGGATTTTCAACAACTCTCCTCCATTCTCAACTCTTCTCTCCACAACTCACCTCATGTTAACTATCCCGATCCTCTCTATGGAATGGGAAATAACACATTAAATCCAAGCCTCTTGAGTTTGCTCACAGCTTTCTTATCACCACCACCACCACCACCACCACCACCATCTCAGAACCCAGATGCTGTAAATCAAAGTTTCCAGCAAAGCCAGCAGCTTAATAACTCAATCCAAACCTTCCCTCTCCAAGACAACCAATCCTGTGCTGCTTCTCAGCCTTTACGTCTGGAACCTCATCAACTCATGAAAGCAAAACTGGATCAAATGATCTCTCCAGGTACCGCTAATTTCAGCTACCAAAATAGCCTGCCAAATGTGGGGCAGCAAGAAGGAGGTCCTTACTCTACCAGTCTTGTGGAAAATCAGATTGCACATAACAAGAGGGGCGAGCCGAATTTCAATTTAGGGTCTTTGATATCGTACTCGACACCTTCATCTTCCGCTAGTCCGAGCACTTTGAACTCGTCCGCATCTTCTATAACATTTGTCAACGGTGCCACTGAAGAGGAAAGGGACACTTACTGCAGCAACATGTTGGTGTATAACATCTCAAACGGCTTAAATATTGATGGCTCTGGACTTTTGTGA	1038	0.4586	MTKPASDDQKNGLKKGPWTPEEDQKLIDYIHEHGHGKWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGRFSFGEEETIIQLHSVLGNKWSTIAASLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPCLDFQQLSSILNSSLHNSPHVNYPDPLYGMGNNTLNPSLLSLLTAFLSPPPPPPPPPSQNPDAVNQSFQQSQQLNNSIQTFPLQDNQSCAASQPLRLEPHQLMKAKLDQMISPGTANFSYQNSLPNVGQQEGGPYSTSLVENQIAHNKRGEPNFNLGSLISYSTPSSSASPSTLNSSASSITFVNGATEEERDTYCSNMLVYNISNGLNIDGSGLL	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci7g1964	345	MobiDBLite	consensus disorder prediction	1	20	-	-
	Prci7g1964	345	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	66	IPR017930	-
	Prci7g1964	345	SMART	sant	14	64	IPR001005	-
	Prci7g1964	345	SMART	sant	67	115	IPR001005	-
	Prci7g1964	345	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	250	-	-
	Prci7g1964	345	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	67	117	IPR017930	-
	Prci7g1964	345	MobiDBLite	consensus disorder prediction	175	190	-	-
	Prci7g1964	345	FunFam	Transcription factor MYB39	70	131	-	-
	Prci7g1964	345	Gene3D	-	70	117	-	-
	Prci7g1964	345	ProSiteProfiles	Myb-like domain profile.	10	62	IPR001005	-
	Prci7g1964	345	MobiDBLite	consensus disorder prediction	173	198	-	-
	Prci7g1964	345	FunFam	MYB-related transcription factor	14	67	-	-
	Prci7g1964	345	CDD	SANT	70	113	IPR001005	-
	Prci7g1964	345	Gene3D	-	12	68	-	-
	Prci7g1964	345	Pfam	Myb-like DNA-binding domain	15	62	IPR001005	-
	Prci7g1964	345	Pfam	Myb-like DNA-binding domain	68	112	IPR001005	-
	Prci7g1964	345	SUPERFAMILY	Homeodomain-like	12	109	IPR009057	-
	Prci7g1964	345	CDD	SANT	17	62	IPR001005	-
	Prci7g1964	345	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci7g1964	Prci-Chr7	33968369	33970493	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci7g1964	9	341	MYB Transcription Factor Family	AT4G21440	45.787	2.57e-87	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Prci7g1964		Myb_DNA-binding	7.7e-17	CL0123