Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1956 ATGGCCACCACAGAGCTAGACGATTCACGTGCTTCACGGTTGCAGGATAACCACCACACAACAGATGACGACGAAGATTACAGCGTCACAGACAGCTTGGACGACGCGGAGGAGGAGACGGATGAAGAAGAAGGGAACAACGGAACACACGACGGTGACAAGGCGGTCGGGTGGTGCTGTCGGGGGAAAGGGGTGACTGGAGGGTGCGGTTTCGGCGGGAAGGTGCTGGACCCGAGGGCGAAGTGGGTTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCGATGGGCTTGTTCGTGGACCCACTCTTCTTCTACGCCCTCTCCGTGAGCGACACGTACATGTGCCTCTTCGTCGACGGATGGTTCGCCGTCACCGTCATGGCTCTCCGCTGCATGACGGACGCCTTGCACCTCTGGAACATGTGGCTGCAATTCAAAATGGGCAAGCGCCACTTCGGAAGTGGCCTGGCCGTCAATACGAGCCGTCGCTTGGCCGCTCTTCGCTATCTAAAGGTCAAGACAGGCTTCTTCTTCGACCTCTTCGTCATACTCCCTCTACCTCAGATTGTACTATGGGTTACGATCCCGTATCTGTTGGAGAATGGATCGGTGACGTTGGCGATGACGGTGTTCTTAATAATGTTTCTGTTTCAATATCTTCCAAAGATATATCACTCTGTTTGCCTCTTGCGACGCTTGCAAAACCTCTCCGGCTACATTTTTGGCACCGTTTGGTGGGGAATTGCCCTTAACATGATCGCCTATTTTGTCGCCTCCCATGCAGCAGGAGCATGCTGGTACTTGCTAGGGATTCAGAGGGCGGCCAAGTGTCTGAAAGAGCAATGCGGGAAAACGAGCGGGTGTGGGCTAGGAATACTGTCTTGCAAGGAACCAATATATTATGGAACCAATGGGATGGTGAGGGACAGAGCAAGACAGTCATGGGCAGAGAACAGGCAAGCCAGGTCGACGTGCTTGGACAGCTCTGACAACTACGACTATGGAGCTTATAAATGGACCGTTCAGCTCGTCACCAACGACAGCCGACTTGAAAAGATTCTCTTCCCTATCTTTTGGGGCCTCATGACGCTAAGCACTTTCGGGAACCTGGAGAGCACAACAGAATGGCTAGAAGTGGTTTTCAACATCATTGTTTTGACCAGCGGCCTTATTCTGGTCACCATGTTGATTGGAAACATCAAGGTTTTCTTGCATGCAACGACATCAAAAAAGCAAGCGATGCAACTGAAGATGAGGAACATAGAGTGGTGGATGAGGAAGAGGCACCTTCCTCCTGGGTTTCGGCAGCGCGTGAGGAACTACGAACGGCAGCGATGGGCGGCGACGCGTGGAGTGGACGAATTCGAGATGATCAGAAATCTGCCGGAGGGCCTCCGAAGAGACATCAAGTACCATCTCTGCTTGGACTTGGTCCGGCAGGTTCCCCTGTTTCAGCACATGGATGAACTGGTGCTGGAGAACATCTGCGACCGCGTGAAGTCACTCATATTCACAAAAGGAGAAACAATAACCAGAGAGGGAGATCCAGTTCAGAGAATGCTGTTTGTTGTGAGAGGTCATCTTCAGAGCAGTCAAGTTCTGAGAGACGGCGTGAAAAGTTACTGCATGTTAGGGCCAGGGAACTTCAGCGGCGACGAGCTCCTCTCGTGGTGTCTGCGGAGGCCGTTCATAGAGCGGCTGCCGCCGTCGTCGTCGACGCTGATCACCCTGGAAACGACGGAGGCGTTTGGGCTCGAAGCGGAGGACGTCAAGTACGTGACGCAGCACTTCAGGTACACGTTCATGAACGAGAAGGTGAAGAGGAGCGCCAGGTATTACTCGCCGGGATGGAGAACTTGGGCAGCCGTTGCCATTCAGCTCGCGTGGAGGAGGCACAAGCATCGCCTGACCTTGGCGTCGTTGTCGTTCATAAGGCCTCGAAGGCCTGTGTCTCGCTGCTCTTCTCTTGGAGAGGACAGACTTCGCCTCTACACTGCCTTGTTGACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2046 0.5342 MATTELDDSRASRLQDNHHTTDDDEDYSVTDSLDDAEEETDEEEGNNGTHDGDKAVGWCCRGKGVTGGCGFGGKVLDPRAKWVQEWNRVFLLVCAMGLFVDPLFFYALSVSDTYMCLFVDGWFAVTVMALRCMTDALHLWNMWLQFKMGKRHFGSGLAVNTSRRLAALRYLKVKTGFFFDLFVILPLPQIVLWVTIPYLLENGSVTLAMTVFLIMFLFQYLPKIYHSVCLLRRLQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGKTSGCGLGILSCKEPIYYGTNGMVRDRARQSWAENRQARSTCLDSSDNYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPPGFRQRVRNYERQRWAATRGVDEFEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFMNEKVKRSARYYSPGWRTWAAVAIQLAWRRHKHRLTLASLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1956 681 FunFam cyclic nucleotide-gated ion channel 4 482 600 - -
Prci7g1956 681 SUPERFAMILY Voltage-gated potassium channels 78 405 - -
Prci7g1956 681 Gene3D Helix hairpin bin 409 475 - -
Prci7g1956 681 SMART cnmp_10 484 613 IPR000595 -
Prci7g1956 681 Gene3D Jelly Rolls 482 600 IPR014710 -
Prci7g1956 681 MobiDBLite consensus disorder prediction 27 46 - -
Prci7g1956 681 SUPERFAMILY cAMP-binding domain-like 410 598 IPR018490 -
Prci7g1956 681 MobiDBLite consensus disorder prediction 1 50 - -
Prci7g1956 681 MobiDBLite consensus disorder prediction 9 26 - -
Prci7g1956 681 ProSiteProfiles cAMP/cGMP binding motif profile. 484 594 IPR000595 -
Prci7g1956 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 646 - -
Prci7g1956 681 CDD CAP_ED 484 590 IPR000595 -
Prci7g1956 681 Pfam Ion transport protein 86 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci7g1956 681 Pfam Cyclic nucleotide-binding domain 505 592 IPR000595 -
Prci7g1956 681 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1956 Prci-Chr7 33921259 33927061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1956 73 680 Ion Channels AT5G54250 80.744 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1956 K05391 - zju:107430493 1123.61