Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1904 ATGGGGCCTCTTATGATCATTCTTTCTCGTTTTCTCTGCTTCGTTTTCCTTGTGTTCAGCGCCGCTACACCCCACGTCCATGCCTTACCTTGGCTCCATGCTCATGCAACCTTCTATGGAGCAGATCAAAATCCCACCGCCTTGGGAGGAGCATGTGGTTACGATAATACGTTTCATGCTGGGTTTGGAGTGAACACAGCAGCAGTGAGCACGATGCTTTTCAGAGGCGGACAGGTGTGTGGTGCATGCTACCGAGTTATGTGTGACTACCGGGCCGACCCAAAATGGTGCCTCCGGGGCCGCACCGTCACCGTCACGGCCACCAACTTCTGCCCTCCGAACAACCACGGAGGTTGGTGCGACCCGCCTCACCATCACTTCGACATGTCCATGCCTGCTTTCTTTCGCATTGCACGCCAAGGCAACGAAGGCATCGTCCCTGTCCTTTATATCAGGGTGAGATGCAAGAGAAGAGGGGGAGTGAGGTTTACGTTGAAGGGGCGAGGGAACTTCAACATGGTGATGCTATCCAACGTCGGAGGCAGTGGAGAGGTTCAGGCAGTGTGGGTGAGAGGTTCCAGGTCAGCAACGTGGGCCCCAATGCACAGGAACTGGGGGGCCTACTGGCAAGCCAGCATGGATCTTCGAAACCAGAACCTCTCCTTCAAGCTCACCTTGTCCGATTCCAACTCTCTTCTCTTCTCCAATGTCGTCCCTTCCTCTTGGTCCTTCGGCCAGACCTTTTCCTCCCATTCTCAGTTCTTCTAA 768 0.5456 MGPLMIILSRFLCFVFLVFSAATPHVHALPWLHAHATFYGADQNPTALGGACGYDNTFHAGFGVNTAAVSTMLFRGGQVCGACYRVMCDYRADPKWCLRGRTVTVTATNFCPPNNHGGWCDPPHHHFDMSMPAFFRIARQGNEGIVPVLYIRVRCKRRGGVRFTLKGRGNFNMVMLSNVGGSGEVQAVWVRGSRSATWAPMHRNWGAYWQASMDLRNQNLSFKLTLSDSNSLLFSNVVPSSWSFGQTFSSHSQFF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1904 255 Pfam Expansin C-terminal domain 161 239 IPR007117 -
Prci7g1904 255 PANTHER EXPANSIN-A15 12 253 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Prci7g1904 255 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Prci7g1904 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Prci7g1904 255 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Prci7g1904 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Prci7g1904 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Prci7g1904 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 160 IPR007112 -
Prci7g1904 255 Pfam Lytic transglycolase 66 150 IPR009009 -
Prci7g1904 255 CDD DPBB_EXPA_N 30 155 - -
Prci7g1904 255 SUPERFAMILY Barwin-like endoglucanases 12 178 IPR036908 -
Prci7g1904 255 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Prci7g1904 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Prci7g1904 255 Gene3D - 160 255 IPR036749 -
Prci7g1904 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Prci7g1904 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Prci7g1904 255 Gene3D - 19 156 IPR036908 -
Prci7g1904 255 SMART dpbb_1 66 150 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1904 Prci-Chr7 33550012 33551549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1904 5 255 Expansin Gene Family AT3G15370 57.295 1.90e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1904 - - gmx:100803855 433.335