Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1880 ATGGACCATGATATATGTCGCTGGATACTAGAGTTTTTGCTTAGGAGTTCCATACCAGATTCCATCGTCAAGAAAATCTTCAAGCTTTTGCCTTTCTCTGATGTCGATTCGCGGCTGAGGAAAACATTGGTTCTTAGGGATGTTCAATCCGAGGTGGCTGCGGCTTCCCTTACAGAAAACCTATTAGCCTGTTTAGAGGTTATTGAAGAAATAAATAAGCTCGATGGCATTGCAATCACAACAGCGATGAAGGAGGCATATTGTGCTGTTGCCGTGCAGTGCACCGTCAAGTACCTTGATGCTTGCCCGCATAAGAACACTAACGGCTTGTTTGACGATGCTGTAAATAGGATTTGGAGGGGCCGAGTTCGCAGGATGATGGAGGCGGTGGCATCAGGGATGAGGATTGAATTGCTTACGGCGGAGTTGATAGGTTGGAAGGACGTCATAGAGTCTTGCCGTTGGGATGAAGAGGTGTGCCAGATTTTAACGAAGACTAATACAAAAGAACATGCACTCGATAAGGTGAGGGTCTATCTAAAAGAAACTTGGGCATCCATGGGCCCTTCTTTTCTAGAGCTAGCAGCTGCATCTACTATTGGCGGAAGTCAGGCATTGGGTGGCACTGACATGCCTCAGAGGATAAATAGAGCGGCAATTCAAAAGGGCAAGCTGCCGCTTGAACATGATCACGGTCTACCCCATACACGTAGAGGAGTTCATTTTACCGTTGCTGAGAAAGCAGGGCCAACGACTATGTGCAGCGAAGATCACAGTGCATCTACTATTCAAGTCAAAAAACTTCGGAAATCTCTCATATCAAGTTCTTTGGACTTGCAAGCAGTGGTGAAGGATCCTCTTCCTGATGCAGTACATAATTCTGACATTGTGGGATCTGAATTAGCATCAAAGGGTGTGAATCGTGAGCCTCCTTTTGAAAACCAGAGCGCAGTTGTAGATGCACCGGAACAAAATACTTGCAAGAGCATGGTGCTTTATCAACCTATTGATGATATTTTAAAGAAACAATATTCTGCTGATTGTAGTAATGTTCAGCGTCCCAGCTTGATGCAACGAAATAGTACTGCCCATACTTATAAGCAGGATGATTCGTTTAATGACTTGCCTGGGGGAAGCCCTAAGAAAAGGAGGAGACAGGGAAAATGGAGTTCTGAAGAAGAGGATGCATTAAGGGCTGGTGTAAAGAAGTTTGGCAAAGGAAATTGGAGGTCAATCCGAAAATTTTACAGTGAGATATTTACGAAGACAGGAAGAACAGAAGTTGATTTGAAGGATAAATGGAGAAACTTGACGCGTTTGGACACTTCAGGAAGTATTTTGATTTGA 1347 0.4417 MDHDICRWILEFLLRSSIPDSIVKKIFKLLPFSDVDSRLRKTLVLRDVQSEVAAASLTENLLACLEVIEEINKLDGIAITTAMKEAYCAVAVQCTVKYLDACPHKNTNGLFDDAVNRIWRGRVRRMMEAVASGMRIELLTAELIGWKDVIESCRWDEEVCQILTKTNTKEHALDKVRVYLKETWASMGPSFLELAAASTIGGSQALGGTDMPQRINRAAIQKGKLPLEHDHGLPHTRRGVHFTVAEKAGPTTMCSEDHSASTIQVKKLRKSLISSSLDLQAVVKDPLPDAVHNSDIVGSELASKGVNREPPFENQSAVVDAPEQNTCKSMVLYQPIDDILKKQYSADCSNVQRPSLMQRNSTAHTYKQDDSFNDLPGGSPKKRRRQGKWSSEEEDALRAGVKKFGKGNWRSIRKFYSEIFTKTGRTEVDLKDKWRNLTRLDTSGSILI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1880 448 SUPERFAMILY Homeodomain-like 383 439 IPR009057 -
Prci7g1880 448 PANTHER MYB TRANSCRIPTION FACTOR 1 439 - -
Prci7g1880 448 MobiDBLite consensus disorder prediction 376 394 - -
Prci7g1880 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 381 442 IPR017930 -
Prci7g1880 448 MobiDBLite consensus disorder prediction 361 394 - -
Prci7g1880 448 SMART sant 385 440 IPR001005 -
Prci7g1880 448 CDD SANT_TRF 388 439 - -
Prci7g1880 448 Gene3D - 379 441 - -
Prci7g1880 448 Pfam Myb-like DNA-binding domain 387 437 IPR001005 -
Prci7g1880 448 ProSiteProfiles Myb-like domain profile. 381 438 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1880 Prci-Chr7 33449984 33453653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1880 389 437 Single Myb Histone (SMH) Gene Family AT1G15720 57.143 6.63e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci7g1880 Myb_DNA-binding 1.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1880 - K11111 pcin:129298725 892.108