Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1870 ATGGAGGCCAAGAGTATTGAGAGGAAACGACCATCCACTGAGCAGTCAAAGCATAAAATAATTGAAGAAGCAGATGATGAAGAAGAGGAAGAAGAGGAAATGAGGGGCGGTACTGGTGGTCGTGTAGAAGAGGACAAGAAGAAAGGAATTGGTGGGAGTAACAGAAGAGGATCAAGTGGTGGTTATAGAGTTTCTGCACCTTCCTGCCAAGCAGAGAGGTGTGGAGCTAACTTGACTGATGCAAAGAGATACCATCGCCGCCATAAAGTATGCGAGTTTCATTCCAAGGCTTCTGTTGTGATGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCACGACATAGCGGAATTTGATGATGCCAAGAGGAGCTGCCGGAGGAGATTGGCGGAGCACAATGAGAGGCGGCGGAAAAGCAATGCCGAAACTCACAGCGATGGCGGCGAAAGTCATCATAACCCAATGGAAGGCCGTATCAGGCATGTTGATGACAGGGGAAGAAGAGGGAACCAGATGAACTTTAATTCTGGGAATTGGAGCAGCAAGTCTTTCCATATCAGATGA 576 0.4844 MEAKSIERKRPSTEQSKHKIIEEADDEEEEEEEMRGGTGGRVEEDKKKGIGGSNRRGSSGGYRVSAPSCQAERCGANLTDAKRYHRRHKVCEFHSKASVVMVAGLRQRFCQQCSRFHDIAEFDDAKRSCRRRLAEHNERRRKSNAETHSDGGESHHNPMEGRIRHVDDRGRRGNQMNFNSGNWSSKSFHIR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1870 191 Gene3D - 64 130 IPR036893 GO:0003677|GO:0005634
Prci7g1870 191 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Prci7g1870 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 148 IPR044817 GO:0003677
Prci7g1870 191 MobiDBLite consensus disorder prediction 135 191 - -
Prci7g1870 191 MobiDBLite consensus disorder prediction 173 191 - -
Prci7g1870 191 MobiDBLite consensus disorder prediction 1 66 - -
Prci7g1870 191 MobiDBLite consensus disorder prediction 135 172 - -
Prci7g1870 191 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Prci7g1870 191 MobiDBLite consensus disorder prediction 34 52 - -
Prci7g1870 191 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Prci7g1870 191 Pfam SBP domain 69 142 IPR004333 GO:0003677
Prci7g1870 191 Coils Coil 126 146 - -
Prci7g1870 191 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1870 Prci-Chr7 33363810 33367342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1870 63 183 SBP-box Gene Family AT3G15270 51.240 7.25e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci7g1870 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1870 - - aprc:113864686 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1870 7 33363810 33367342 Prci3g1043 3 13435929 13437736 ECH
Prci7g1870 7 33363810 33367342 Prci7g1870 7 33363810 33367342 ECH