Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1865 ATGGCTCCCCGAGACCCGCCCGCCACTCTTGCCGCCGTACCCAACCACCCCACCCTCACCGCCAAAGAGATTCGCTACCGAGGCGTCAGGAAGCGACCCTGGGGGCGCTACGCCGCCGAGATCCGTGACCCCGGTAAGAAAACTCGGGTTTGGCTTGGCACTTTCGACACCGCTGAGGAGGCGGCGCGTGCCTACGACACCGCTGCACGCGATTTCCGTGGCGCCAAGGCCAAGACCAATTTCCCCACTCCTTCTGAGCTTGTAAATAACACCAACTCTACCCGCAGTCCTAGCCAGAGCAGCACCCTCGATTCTTCATCTCCGCCGCCGCTAGACCTCAGCCTCACGCCACTTTCTGCTGGCGTCGGTGCCTTGGGGTACCCGGTGATCCCCTTGGCTCGCCCCGTTGTGTTTTTCGACGCGTTTGCGAGGGCTGACGGCATGAGAAGCTTTGCCCGCCGCGAGATGTGTGGGTTTGACCGCCCAGTGACTGATTTACGTCCGGCAGCGGGCAGTGCGCAGAGTGACTCCGATTCATCGTCTGTGGTGGACTACGATCGTGCTTCTCGGCCTCGGAGGCTTCTGGATCTCGACCTTAACCTTGCTCCCCCGGCGGAGGTTGCTTGA 627 0.622 MAPRDPPATLAAVPNHPTLTAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTPSELVNNTNSTRSPSQSSTLDSSSPPPLDLSLTPLSAGVGALGYPVIPLARPVVFFDAFARADGMRSFARREMCGFDRPVTDLRPAAGSAQSDSDSSSVVDYDRASRPRRLLDLDLNLAPPAEVA 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1865 208 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Prci7g1865 208 MobiDBLite consensus disorder prediction 76 110 - -
Prci7g1865 208 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Prci7g1865 208 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Prci7g1865 208 MobiDBLite consensus disorder prediction 82 110 - -
Prci7g1865 208 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Prci7g1865 208 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Prci7g1865 208 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Prci7g1865 208 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Prci7g1865 208 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Prci7g1865 208 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 187 - -
Prci7g1865 208 FunFam Ethylene-responsive transcription factor 2 25 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1865 Prci-Chr7 33313283 33314316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1865 12 140 AP2-EREBP Transcription Factor Family AT3G15210 65.972 2.49e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci7g1865 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1865 K09286 - gmx:100500601 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1865 7 33313283 33314316 Prci3g1052 3 13577751 13579222 ECH
Prci7g1865 7 33313283 33314316 Prci7g1865 7 33313283 33314316 ECH