Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1839 ATGACTGATTTGGAAATGGATCGACAAAGGCAAGATTATTATCATTCTGAACCCTGTCTCATTCTAAGGGGCCCCAACATCTCACAGCCAAATATCCACACGGTGGTGGCGGCTTCAGGAAACACAAGTAATATTGATTCCCACTATTCGCTAGATGCTCATGAGAATGGTTTGATGTATGGGATGACACAGTTTAATGGGATTCATCATCAACCCAATTTTGATGCGCGTGCTGCAGCATCATCTGGCTTGTATTTTTCTGCAACCACTCCTCCCTCTGGTGCTGGTGTAGTACCCCAGCCCTTTAATTACCGAGCATCTGATCAATTGCCAGCTCCAGGAACATATGCTTTCTCTGGTATTTTCATGGATGATGCCAGAGGTCCATATAAACAAAAAATTACGGAGGGCATCAGGGGAAATTACCAACATTTTAATGCTGCTGCTAGTTCTTCGGTAGCTCCTCCAAACACAAGGCACTCTGATGGGGTTACTGCATCATTTTCCTTGCCTCAATTTAGAGGGAATCACATTCCATCACTTGTAGAAATTGGACCTCATGGTTGTTTATGGAGCAGATCTGGTGACTCAGTTTTGGTGCATGAACACAACCATTTGATTCGAGGAAACTATTTAGGCCAGCGCTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAATGGTACTAACAGTGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATGCCTTATTTGCAAGCAACTGTTAATGGAAGTTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCATGATACAGCTAACAACAGAAGCAGCCTCAGGTTCGCTCATCAACCTCCAGTCAATCAGCAGCACCATAATTATCACCTTCCAACTCTGCCCATGCAAGGAGTGAGAGGTCACAATATCAACTTTCACCCTCCAGTTACTGCAACTACTTATAGGGGGGTTCCATCAAATTCTCCGCACAGTACTGTCATCCCAGTGCAGAATGGTTTTGGGCTGGGTGGTAGGCACGTTGACCTTGTGCCATCAGCAAGCCAATGGATACATCGTTCTCATAGAGGAGTCACACCTGATACATCTCTTAGACATCAAAATTCCCGTCCAATGAGTTTTCTTCATGTCGATGATGTTGCTTTACTTGATGAAGTGGAAAATTTAATTGATCATCATCATGGTGATATGCGTTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGTGAGCGGATTGGCAATGTAAGCACAGGTTTATCAGAGGAAACTATTACAACGCAGTTGAAAACGAAAACTTTCGATTGCTCCGGCGCGGCTAATCTGAAGGAAGCAGCTTCTGAGGATGAGGAAAATGACTCTTGCATCATATGCCTGGATGAATATAAGAAGCTAGATACAGTTGGAATTCTCGAGTGTGGGCATGAGTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAACGTTTGCCCCATATGCAAGTCAGAGGCATTGATCACCCCTAGAACGAAGGGCGCATAA 1548 0.4425 MTDLEMDRQRQDYYHSEPCLILRGPNISQPNIHTVVAASGNTSNIDSHYSLDAHENGLMYGMTQFNGIHHQPNFDARAAASSGLYFSATTPPSGAGVVPQPFNYRASDQLPAPGTYAFSGIFMDDARGPYKQKITEGIRGNYQHFNAAASSSVAPPNTRHSDGVTASFSLPQFRGNHIPSLVEIGPHGCLWSRSGDSVLVHEHNHLIRGNYLGQRFQPAPPPWLDQQLNGTNSEGHNMAWNQSHSMPYLQATVNGSSLENANTGMQRYHDTANNRSSLRFAHQPPVNQQHHNYHLPTLPMQGVRGHNINFHPPVTATTYRGVPSNSPHSTVIPVQNGFGLGGRHVDLVPSASQWIHRSHRGVTPDTSLRHQNSRPMSFLHVDDVALLDEVENLIDHHHGDMRLDIEDMSYEELLALGERIGNVSTGLSEETITTQLKTKTFDCSGAANLKEAASEDEENDSCIICLDEYKKLDTVGILECGHEYHADCLKKWLLLKNVCPICKSEALITPRTKGA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1839 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 126 507 IPR045191 GO:0061630
Prci7g1839 515 SUPERFAMILY RING/U-box 456 508 - -
Prci7g1839 515 CDD RING-H2_RNF24-like 460 506 - -
Prci7g1839 515 Pfam Ring finger domain 460 503 IPR001841 -
Prci7g1839 515 ProSiteProfiles Zinc finger RING-type profile. 462 503 IPR001841 -
Prci7g1839 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 423 507 IPR013083 -
Prci7g1839 515 SMART ring_2 462 502 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1839 Prci-Chr7 33177410 33181571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1839 379 510 C3H Transcription Factor Family AT2G15530 48.905 4.49e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1839 K19041 - qsa:O6P43_029149 569.311