Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1838 ATGAAAATTCAGTGTCAGATGACTGATTTGGAAATGGATCGACAAAGGCAAGATTATTATCATTCTGAACCCTGTCTCATTCTAAGGGGCCCCAACATCTCACAGCCAAATATCCACACGGTGGTGGCGGCTTCAGGAAACACAAGTAATATTGATTCCCACTATTCGCTAGATGCTCATGAGAATGGTTTGATGTATGGGATGACACAGTTTAATGGGATTCATCATCAACCCAATTTTGATGCGCGTGCTGCAGCATCATCTGGCTTGTATTTTTCTGCAACCACTCCTCCCTCTGGTGCTGGTGTAGTACCCCAGCCCTTTAATTACCGAGCATCTGATCAATTGCCAGCTCCAGGAACATATGCTTTCTCTGGTATTTTCATGGATGATGCCAGAGGTCCATATAAACAAAAAATTACGGAGGGCATCAGGGGAAATTACCAACATTTTAATGCTGCTGCTAGTTCTTCGGTAGCTCCTCCAAACACAAGGCACTCTGATGGGGTTACTGCATCATTTTCCTTGCCTCAATTTAGAGGGAATCACATTCCATCACTTGTAGAAATTGGACCTCATGGTTGTTTATGGAGCAGATCTGGTGACTCAGTTTTGGTGCATGAACACAACCATTTGATTCGAGGAAACTATTTAGGCCAGCGCTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAATGGTACTAACAGTGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATGCCTTATTTGCAAGCAACTGTTAATGGAAGTTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCATGATACAGCTAACAACAGAAGCAGCCTCAGGTTCGCTCATCAACCTCCAGTCAATCAGCAGCACCATAATTATCACCTTCCAACTCTGCCCATGCAAGGAGTGAGAGGTCACAATATCAACTTTCACCCTCCAGTTACTGCAACTACTTATAGGGGGGTTCCATCAAATTCTCCGCACAGTACTGTCATCCCAGTGCAGAATGGTTTTGGGCTGGGTGGTAGGCACGTTGACCTTGTGCCATCAGCAAGCCAATGGATACATCGTTCTCATAGAGGAGTCACACCTGATACATCTCTTAGACATCAAAATTCCCGTCCAATGAGTTTTCTTCATGTCGATGATGTTGCTTTACTTGATGAAGTGGAAAATTTAATTGATCATCATCATGGTGATATGCGTTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGTGAGCGGATTGGCAATGTAAGCACAGGTTTATCAGAGGAAACTATTACAACGCAGTTGAAAACGAAAACTTTCGATTGCTCCGGCGCGGCTAATCTGAAGGAAGCAGCTTCTGAGGATGAGGAAAATGACTCTTGCATCATATGCCTGGATGAATATAAGAAGCTAGATACAGTTGGAATTCTCGAGTGTGGGCATGAGTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAACGTTTGCCCCATATGCAAGTCAGAGGCATTGATCACCCCTAGAACGAAGGGCGCATAA 1566 0.4413 MKIQCQMTDLEMDRQRQDYYHSEPCLILRGPNISQPNIHTVVAASGNTSNIDSHYSLDAHENGLMYGMTQFNGIHHQPNFDARAAASSGLYFSATTPPSGAGVVPQPFNYRASDQLPAPGTYAFSGIFMDDARGPYKQKITEGIRGNYQHFNAAASSSVAPPNTRHSDGVTASFSLPQFRGNHIPSLVEIGPHGCLWSRSGDSVLVHEHNHLIRGNYLGQRFQPAPPPWLDQQLNGTNSEGHNMAWNQSHSMPYLQATVNGSSLENANTGMQRYHDTANNRSSLRFAHQPPVNQQHHNYHLPTLPMQGVRGHNINFHPPVTATTYRGVPSNSPHSTVIPVQNGFGLGGRHVDLVPSASQWIHRSHRGVTPDTSLRHQNSRPMSFLHVDDVALLDEVENLIDHHHGDMRLDIEDMSYEELLALGERIGNVSTGLSEETITTQLKTKTFDCSGAANLKEAASEDEENDSCIICLDEYKKLDTVGILECGHEYHADCLKKWLLLKNVCPICKSEALITPRTKGA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1838 521 ProSiteProfiles Zinc finger RING-type profile. 468 509 IPR001841 -
Prci7g1838 521 Pfam Ring finger domain 466 509 IPR001841 -
Prci7g1838 521 SUPERFAMILY RING/U-box 462 514 - -
Prci7g1838 521 CDD RING-H2_RNF24-like 466 512 - -
Prci7g1838 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 513 IPR013083 -
Prci7g1838 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 132 513 IPR045191 GO:0061630
Prci7g1838 521 SMART ring_2 468 508 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1838 Prci-Chr7 33177410 33181571 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1838 385 516 C3H Transcription Factor Family AT2G15530 48.905 5.90e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1838 K19041 - qsa:O6P43_029149 571.237