Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1837 ATGAAAATTCAGTGTCAGATGACTGATTTGGAAATGGATCGACAAAGGCAAGATTATTATCATTCTGAACCCTGTCTCATTCTAAGGGGCCCCAACATCTCACAGCCAAATATCCACACGGTGGTGGCGGCTTCAGGAAACACAAGTAATATTGATTCCCACTATTCGCTAGATGCTCATGAGAATGGTTTGATGTATGGGATGACACAGTTTAATGGGATTCATCATCAACCCAATTTTGATGCGCGTGCTGCAGCATCATCTGGCTTGTATTTTTCTGCAACCACTCCTCCCTCTGGTGCTGGTGTAGTACCCCAGCCCTTTAATTACCGAGCATCTGATCAATTGCCAGCTCCAGGAACATATGCTTTCTCTGGTATTTTCATGGATGATGCCAGAGGTCCATATAAACAAAAAATTACGGAGGGCATCAGGGGAAATTACCAACATTTTAATGCTGCTGCTAGTTCTTCGGTAGCTCCTCCAAACACAAGGCACTCTGATGGGGTTACTGCATCATTTTCCTTGCCTCAATTTAGAGGGAATCACATTCCATCACTTGTAGAAATTGGACCTCATGGTTGTTTATGGAGCAGATCTGGTGACTCAGTTTTGGTGCATGAACACAACCATTTGATTCGAGGAAACTATTTAGGCCAGCGCTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAATGGTACTAACAGTGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATGCCTTATTTGCAAGGTATGCAGAGATATCATGATACAGCTAACAACAGAAGCAGCCTCAGGTTCGCTCATCAACCTCCAGTCAATCAGCAGCACCATAATTATCACCTTCCAACTCTGCCCATGCAAGGAGTGAGAGGTCACAATATCAACTTTCACCCTCCAGTTACTGCAACTACTTATAGGGGGGTTCCATCAAATTCTCCGCACAGTACTGTCATCCCAGTGCAGAATGGTTTTGGGCTGGGTGGTAGGCACGTTGACCTTGTGCCATCAGCAAGCCAATGGATACATCGTTCTCATAGAGGAGTCACACCTGATACATCTCTTAGACATCAAAATTCCCGTCCAATGAGTTTTCTTCATGTCGATGATGTTGCTTTACTTGATGAAGTGGAAAATTTAATTGATCATCATCATGGTGATATGCGTTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGTGAGCGGATTGGCAATGTAAGCACAGGTTTATCAGAGGAAACTATTACAACGCAGTTGAAAACGAAAACTTTCGATTGCTCCGGCGCGGCTAATCTGAAGGAAGCAGCTTCTGAGGATGAGGAAAATGACTCTTGCATCATATGCCTGGATGAATATAAGAAGCTAGATACAGTTGGAATTCTCGAGTGTGGGCATGAGTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAACGTTTGCCCCATATGCAAGTCAGAGGCATTGATCACCCCTAGAACGAAGGGCGCATAA 1527 0.4434 MKIQCQMTDLEMDRQRQDYYHSEPCLILRGPNISQPNIHTVVAASGNTSNIDSHYSLDAHENGLMYGMTQFNGIHHQPNFDARAAASSGLYFSATTPPSGAGVVPQPFNYRASDQLPAPGTYAFSGIFMDDARGPYKQKITEGIRGNYQHFNAAASSSVAPPNTRHSDGVTASFSLPQFRGNHIPSLVEIGPHGCLWSRSGDSVLVHEHNHLIRGNYLGQRFQPAPPPWLDQQLNGTNSEGHNMAWNQSHSMPYLQGMQRYHDTANNRSSLRFAHQPPVNQQHHNYHLPTLPMQGVRGHNINFHPPVTATTYRGVPSNSPHSTVIPVQNGFGLGGRHVDLVPSASQWIHRSHRGVTPDTSLRHQNSRPMSFLHVDDVALLDEVENLIDHHHGDMRLDIEDMSYEELLALGERIGNVSTGLSEETITTQLKTKTFDCSGAANLKEAASEDEENDSCIICLDEYKKLDTVGILECGHEYHADCLKKWLLLKNVCPICKSEALITPRTKGA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1837 508 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 118 500 IPR045191 GO:0061630
Prci7g1837 508 Pfam Ring finger domain 453 496 IPR001841 -
Prci7g1837 508 SMART ring_2 455 495 IPR001841 -
Prci7g1837 508 SUPERFAMILY RING/U-box 449 501 - -
Prci7g1837 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 500 IPR013083 -
Prci7g1837 508 CDD RING-H2_RNF24-like 453 499 - -
Prci7g1837 508 ProSiteProfiles Zinc finger RING-type profile. 455 496 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1837 Prci-Chr7 33177410 33181571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1837 372 503 C3H Transcription Factor Family AT2G15530 48.905 7.96e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1837 K19041 - qsa:O6P43_029149 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1837 7 33177410 33181571 Prci7g1837 7 33177410 33181571 ECH