Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1790 ATGTCTCTTGTCAGAGTTTTCCGTTCTCGTAAGTTCTCCAGATCCTTTAGGGGAACTGGGGCTTTGGATGAGGACGACCGTCGGAACGGGATCGTTGGGGCCGAGGCCGGGGAGGACGTGGCGTACGGCAATGCGTGGTCCACCATGCTGCCGGAGCTTCTCGGCGAGATCATACGGCGGGTGGAGGTCAGCGACGAGCGGTGGCCTCCCCGCCGAAACGTTGTCGCTTGTGCATGCGTCTGCAAGAGGTGGAGGGAGATGACTCGTGAGATCGTACGGTCCCCTTCTCAGAGCGGCAAAATTACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGATCCACCCCACCACTGTCTTATAAAGCGAAACAAGAAGACTTCAACATTTTACCTATGTCTTGCCCTTACACCATCTTTCACAGATAAAGGAAAGTTTCTTTTAGCAGCTAGGAGATATAGGCGTGGTGCTAATACTGAATATATCATATCACTTGATGCTGATGACTTTTCCCAGGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGACTTTCTTGGTACCAACTTCACAATCTATGACAGCCAACCGCCTCATAATGGTGCAAAGCCATCAAGCAGCAGGGCGAGCCGTAGATTTACCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGACAGGTCTCATATAAGTTCAACATTCTGAAATCAAGGGGACCGAGAAGGATGGCCTGCACAATGAAGTGCCCCGTTCCTTTGTCAGGAGAAAGTTCAGATGACAAAAATCTGGATACCGATAAGATAAACAGTAAAGAACGTGTTGCTCCGGGGCACTCAATATTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGCCGTGTGACTGTGGCATCAGTGAAGAATTTTCAGCTGGTTGCCACCGTGGATCAGAGCCAATCAGGTGGGAAAGGAGACGAGGAAACAGTTCTCCTCCAGTTTGGGAAGGTTGGGGATGATACTTTCACGATGGATTATAGGCAGCCTTTATCAGCCTTCCAGGCCTTTGCCATTTGCCTCACAAGCTTTGGCACTAAACTGGCGTGTGAGTAA 1128 0.4973 MSLVRVFRSRKFSRSFRGTGALDEDDRRNGIVGAEAGEDVAYGNAWSTMLPELLGEIIRRVEVSDERWPPRRNVVACACVCKRWREMTREIVRSPSQSGKITFPSCLKQPGPRDPPHHCLIKRNKKTSTFYLCLALTPSFTDKGKFLLAARRYRRGANTEYIISLDADDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFTSKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMACTMKCPVPLSGESSDDKNLDTDKINSKERVAPGHSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQSGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1790 375 CDD F-box_AtTLP-like 46 90 - -
Prci7g1790 375 Gene3D Tubby Protein; Chain A 102 375 IPR025659 -
Prci7g1790 375 Pfam Tub family 107 370 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 285 302 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Prci7g1790 375 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Prci7g1790 375 Pfam F-box domain 51 93 IPR001810 GO:0005515
Prci7g1790 375 ProSitePatterns Tub family signature 2. 360 375 IPR018066 -
Prci7g1790 375 PANTHER TUBBY-RELATED 37 373 - -
Prci7g1790 375 SUPERFAMILY Tubby C-terminal domain-like 95 375 IPR025659 -
Prci7g1790 375 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1790 Prci-Chr7 32922610 32926200 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1790 1 375 TUB Transcription Factor Family AT1G53320 73.298 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci7g1790 Tub 1.4e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1790 K19600 - qsa:O6P43_001049 624.78