Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1788 ATGTCTCTTGTCAGAGTTTTCCGTTCTCGTAAGTTCTCCAGATCCTTTAGGGGAACTGGGGCTTTGGATGAGGACGACCGTCGGAACGGGATCGTTGGGGCCGAGGCCGGGGAGGACGTGGCGTACGGCAATGCGTGGTCCACCATGCTGCCGGAGCTTCTCGGCGAGATCATACGGCGGGTGGAGGTCAGCGACGAGCGGTGGCCTCCCCGCCGAAACGTTGTCGCTTGTGCATGCGTCTGCAAGAGGTGGAGGGAGATGACTCGTGAGATCGTACGGTCCCCTTCTCAGAGCGGCAAAATTACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGATCCACCCCACCACTGTCTTATAAAGCGAAACAAGAAGACTTCAACATTTTACCTATGTCTTGCCCTTACACCATCTTTCACAGATAAAGGAAAGTTTCTTTTAGCAGCTAGGAGATATAGGCGTGGTGCTAATACTGAATATATCATATCACTTGATGCTGATGACTTTTCCCAGGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGACTTTCTTGGTACCAACTTCACAATCTATGACAGCCAACCGCCTCATAATGGTGCAAAGCCATCAAGCAGCAGGGCGAGCCGTAGATTTACCAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGTAACTTTGAGGTGGGACAGGTCTCATATAAGTTCAACATTCTGAAATCAAGGGGACCGAGAAGGATGGCCTGCACAATGAAGTGCCCCGTTCCTTTGTCAGGAGAAAGTTCAGATGACAAAAATCTGGATACCGATAAGATAAACAGTAAAGAACGTGTTGCTCCGGGGCACTCAATATTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGCCGTGTGACTGTGGCATCAGTGAAGAATTTTCAGCTGGTTGCCACCGTGGATCAGAGCCAATCAGGTGGGAAAGGAGACGAGGAAACAGTTCTCCTCCAGTTTGGGAAGGTTGGGGATGATACTTTCACGATGGATTATAGGCAGCCTTTATCAGCCTTCCAGGCCTTTGCCATTTGCCTCACAAGCTTTGGCACTAAACTGGCGTGTTTTCTTATCCAAAAAGAAAAACGAAAAAAAAGGAAGATCCACATTAATGGAGGCCTGCCTATGAATTATGCAGCAAGTACAGTGAAAAGCTAG 1215 0.4872 MSLVRVFRSRKFSRSFRGTGALDEDDRRNGIVGAEAGEDVAYGNAWSTMLPELLGEIIRRVEVSDERWPPRRNVVACACVCKRWREMTREIVRSPSQSGKITFPSCLKQPGPRDPPHHCLIKRNKKTSTFYLCLALTPSFTDKGKFLLAARRYRRGANTEYIISLDADDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFTSKQISPQVPAGNFEVGQVSYKFNILKSRGPRRMACTMKCPVPLSGESSDDKNLDTDKINSKERVAPGHSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQSGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACFLIQKEKRKKRKIHINGGLPMNYAASTVKS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1788 404 CDD F-box_AtTLP-like 46 90 - -
Prci7g1788 404 Gene3D Tubby Protein; Chain A 102 375 IPR025659 -
Prci7g1788 404 PRINTS Tubby superfamily signature 285 302 IPR000007 -
Prci7g1788 404 PRINTS Tubby superfamily signature 332 351 IPR000007 -
Prci7g1788 404 PRINTS Tubby superfamily signature 226 253 IPR000007 -
Prci7g1788 404 PRINTS Tubby superfamily signature 303 319 IPR000007 -
Prci7g1788 404 PRINTS Tubby superfamily signature 177 201 IPR000007 -
Prci7g1788 404 PRINTS Tubby superfamily signature 353 375 IPR000007 -
Prci7g1788 404 PRINTS Tubby superfamily signature 161 177 IPR000007 -
Prci7g1788 404 SUPERFAMILY Tubby C-terminal domain-like 95 374 IPR025659 -
Prci7g1788 404 PANTHER TUBBY-RELATED 37 373 - -
Prci7g1788 404 Pfam F-box domain 51 93 IPR001810 GO:0005515
Prci7g1788 404 ProSitePatterns Tub family signature 1. 303 316 IPR018066 -
Prci7g1788 404 Pfam Tub family 107 370 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1788 Prci-Chr7 32922595 32926932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1788 1 374 TUB Transcription Factor Family AT1G53320 73.228 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Prci7g1788 Tub 1.8e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1788 K19600 - qsa:O6P43_001049 622.854