Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1722 ATGGCTCTGGTCTGTGGTTCAACCTCAGTGACGTTCCCCTCGACTTCAGCCCCATCTCTTTCTCCTCACAAGAGCTCAAATGCTAAATCCTCGTTTCTTGGATTCCGATTGGCATTATCGAAGTCTTCTATCTGGCCCAGTGTTCCCGTTAACTCCAGGGAAAGTCTTCAGGACATTTGGAACATGACCTCGTATCCAAAAGCTGCAGATCATGTGAATACAGATAAACCATGGTGCATTGTTGATGCTTCAGACAAAATTCTCGGGAGATTAGCATCGACAATTGCTATTTATATCAGAGGGAAAAATCTGGCAGCCTATACTCCCAGCGTGGACATGGGTGCCTTTGCAATTGTGGTGATTGCAGAAAAAGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGACATTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTGCCCAACTACAGCAGAGAATTCCAGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCTAAAGGAAGGCTTGGCAGAAATCTGTTCACCCACCTAAAGGTTTTTAAGGGCCCAGATCACCCACATCAGGCCCAAAAGCCCGTTGAGTTGCCGATAAGGGATAAAAGAATACAAAAGCCGAGGTAG 645 0.4558 MALVCGSTSVTFPSTSAPSLSPHKSSNAKSSFLGFRLALSKSSIWPSVPVNSRESLQDIWNMTSYPKAADHVNTDKPWCIVDASDKILGRLASTIAIYIRGKNLAAYTPSVDMGAFAIVVIAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQQRIPERIIEHAVRGMLPKGRLGRNLFTHLKVFKGPDHPHQAQKPVELPIRDKRIQKPR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1722 214 MobiDBLite consensus disorder prediction 1 26 - -
Prci7g1722 214 Pfam Ribosomal protein L13 78 194 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 NCBIfam 50S ribosomal protein L13 72 203 IPR005823 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 MobiDBLite consensus disorder prediction 7 26 - -
Prci7g1722 214 FunFam 50S ribosomal protein L13 62 205 - -
Prci7g1722 214 Hamap 50S ribosomal protein L13 [rplM]. 78 204 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 ProSitePatterns Ribosomal protein L13 signature. 168 190 IPR023563 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 CDD Ribosomal_L13 78 191 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 SUPERFAMILY Ribosomal protein L13 73 206 IPR036899 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 PANTHER RIBOSOMAL PROTEIN L13 65 209 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1722 214 Gene3D Ribosomal protein L13 68 210 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1722 Prci-Chr7 32500939 32503404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1722 80 204 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.827 1.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1722 K02871 - qsa:O6P43_001091 338.576