Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1720 ATGGCTCTGGTCTGTGGTTCAACCTCAGTGACGTTCCCCTCGACTTCAGCCCCATCTCTTTCTCCTCACAAGAGCTCAAATGCTAAATCCTCGTTTCTTGGATTCCGATTGGCATTATCGAAGTCTTCTATCTGGCCCAGTGTTCCCGTTAACTCCAGGGAAAGTCTTCAGGTTCGTTGCCTGGATCTCTCCATTGCTCCAAAAGATGAACGATTTATGTTCGAGGAGTCCAAAGCCAATGGCCCAGACATTTGGAACATGACCTCGTATCCAAAAGCTGCAGATCATGTGAATACAGATAAACCATGGTGCATTGTTGATGCTTCAGACAAAATTCTCGGGAGATTAGCATCGACAATTGCTATTTATATCAGAGGGAAAAATCTGGCAGCCTATACTCCCAGCGTGGACATGGGTGCCTTTGCAATTGTGGTGATTGCAGAAAAAGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGACATTCTGGACGACCTGGTGGTATGAAAGTGGAGACATTTGCCCAACTACAGCAGAGAATTCCAGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCTAAAGGAAGGCTTGGCAGAAATCTGTTCACCCACCTAAAGGTTTTTAAGGGCCCAGATCACCCACATCAGGCCCAAAAGCCCGTTGAGTTGCCGATAAGGGATAAAAGAATACAAAAGCCGAGGTAG 720 0.4583 MALVCGSTSVTFPSTSAPSLSPHKSSNAKSSFLGFRLALSKSSIWPSVPVNSRESLQVRCLDLSIAPKDERFMFEESKANGPDIWNMTSYPKAADHVNTDKPWCIVDASDKILGRLASTIAIYIRGKNLAAYTPSVDMGAFAIVVIAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQQRIPERIIEHAVRGMLPKGRLGRNLFTHLKVFKGPDHPHQAQKPVELPIRDKRIQKPR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1720 239 FunFam 50S ribosomal protein L13 87 230 - -
Prci7g1720 239 PANTHER RIBOSOMAL PROTEIN L13 90 234 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 MobiDBLite consensus disorder prediction 1 26 - -
Prci7g1720 239 CDD Ribosomal_L13 103 216 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 Pfam Ribosomal protein L13 103 219 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 MobiDBLite consensus disorder prediction 7 26 - -
Prci7g1720 239 NCBIfam 50S ribosomal protein L13 97 228 IPR005823 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 Hamap 50S ribosomal protein L13 [rplM]. 103 229 IPR005822 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 SUPERFAMILY Ribosomal protein L13 98 231 IPR036899 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 ProSitePatterns Ribosomal protein L13 signature. 193 215 IPR023563 GO:0003735|GO:0005840|GO:0006412
Prci7g1720 239 Gene3D Ribosomal protein L13 93 235 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1720 Prci-Chr7 32500939 32503404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1720 105 229 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 30.827 1.27e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1720 K02871 - qsa:O6P43_001091 385.956