Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1625 ATGGCCTTGCAATTGCAGATGACTTGGCTGCCGAGTCTTCTCACTCAGAAGCGCAAGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCTTGCTACCTCAACAGCGTCCTCCAGTGTCTTACCTACACTCCTCCTCTGGCCAATTTCTGTCTTCGAAACCAGCACTCTTCCCTTTGCGATTCTGCTTCGGAGGAAAGGAAGCGGGACTGCCCCTTTTGTCTGCTAGAGAAACGAATTGTTCGTTCTTTGAGAGTGGATCTCGCCCAAGATGCTCCGTTGAAGATCCAGAGCTGTCTCAGGATTTTCGCCGAGCACTTTCGTTGCGGGCGTCAGGAGGATGCTCACGAGTTCCTGAGGTACGTTATCGATGCCTGCCACAACACCTGCCTTCGCCTCAAGAAGTTGAGGCGCAAAGGGGGCGATACTGCTGTCAATGGTAACGGCTGCAATACTGTTGTGAAGGAGATATTTGGGGGAGCCTTGCAGAGCCAGGTGAAGTGTCTCTCTTGTGGATATGAGTCCAATAAGGTGGATGAAATTATGGATATCAGTCTTGATGTTTTACATAGCAATTCGCTCAAAGATGCTATGCAAAAGTTCTTTCAGCCTGAGATTTTAGATGGGAATAACAAGTACAAATGTGACAATTGCAAGAAATTGGTGACGGCTAAGAAACAAATGTCTATACTTCAAGCCCCTAATGTCCTCGTCATACAACTTAAGAGATTTGAGGGCATATTGGGTGGGAAGATCGATAAGGCTGTTGCATTTGAAGACATTTTGGTGCTTTCTAGCTTCATGTGCAAACAAAGCCAGGATCCAATGCCAGACTATAGGCTCTTTGGTACTATTGTTCATTCTGGATACTCCCCAGAATCAGGCCATTATTATGCTTATATAAAGGATGCAAAAGGCCGGTGGTATTGCTGTGATGATTCTTCTGTCTCACTTGCAACCCTGAAAGAAGTTTTGTCAGAAAAGGTTTACATACTTTTTTTTTCTCGCACTAACCAAAGGCCTGTGCCTGTAAGTAATGGTTTTGCTTCGAACGGCTCAAGGTCTCAGGACTCTTATCACATTAATGGTAGTCAGGCATGTGAATGCCCAAAATATGATGGACCACCAAAAGTAGTGCATACAAAATTAAGTTCTCAACAATCTTCCTGGAAGGACATGTCTGCCATGTCCAAGACTGGTAAAGAGCCTTCTAGCCCCCGAGTGAAGTTTAATTTTAACGGAAATTCTACTTCCAAAAGAGGCCATGAAAGTTTCAATGGGAAAGTTGATGTTCCGTTGAATCAGCCTGTAGTAACTAATGGACATGTAAAAGACTCAATTTCTTTGGAGAATGCGAAGAAAGATCCTTCATCAATCAGGAATGGTTTTGAAAAAAATAAAGTAGATGCTGTTGACAACTTAAAAAGGAAGGATTCAGTGTTAACAAGTAAAAACACTAGTATTCATTCTGTTGAAAAATATCCCAGAAAGTCAGATCTTATGGATGACACTGGGAGAAGCAGAGCAATATCAGGAAATTACAACCATAAGCTAGAAGCCAATGGTCTCAACAACAAACCTAATTCATTGGAGAATAAGAGGAAGGAACCAGAGGCTACCAGCATTTTGCTTGCACATGATGATCAGTCTGAAGCAAGAGTTCAGGAACTTAAAGACAGGCTTGGAAAAGAGGCAAAGTCAGTTTTAAGGTCATGTGGCTGGACAGACAAGGTGTATGACTATATGTCTTCTAGAAAGAGGTTACGTGCACAAGAAGCAGGAAATTCATCAATTGAAGATGAAATAAAGAAGTTGCTAATAAGTGAGGCCAAGGGAGCTTTCATATCACAGATCCCTGAGTCATTGAAAGAGGATCTGATTGTTCGTCTCCGATTATTTAGCAAAGAAAAGGCATAA 1920 0.4297 MALQLQMTWLPSLLTQKRKTDHPVGLRNLGNSCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASEERKRDCPFCLLEKRIVRSLRVDLAQDAPLKIQSCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLRRKGGDTAVNGNGCNTVVKEIFGGALQSQVKCLSCGYESNKVDEIMDISLDVLHSNSLKDAMQKFFQPEILDGNNKYKCDNCKKLVTAKKQMSILQAPNVLVIQLKRFEGILGGKIDKAVAFEDILVLSSFMCKQSQDPMPDYRLFGTIVHSGYSPESGHYYAYIKDAKGRWYCCDDSSVSLATLKEVLSEKVYILFFSRTNQRPVPVSNGFASNGSRSQDSYHINGSQACECPKYDGPPKVVHTKLSSQQSSWKDMSAMSKTGKEPSSPRVKFNFNGNSTSKRGHESFNGKVDVPLNQPVVTNGHVKDSISLENAKKDPSSIRNGFEKNKVDAVDNLKRKDSVLTSKNTSIHSVEKYPRKSDLMDDTGRSRAISGNYNHKLEANGLNNKPNSLENKRKEPEATSILLAHDDQSEARVQELKDRLGKEAKSVLRSCGWTDKVYDYMSSRKRLRAQEAGNSSIEDEIKKLLISEAKGAFISQIPESLKEDLIVRLRLFSKEKA 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1625 639 SUPERFAMILY Cysteine proteinases 17 337 IPR038765 -
Prci7g1625 639 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 338 IPR028889 -
Prci7g1625 639 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 280 298 IPR018200 GO:0004843|GO:0006511
Prci7g1625 639 MobiDBLite consensus disorder prediction 491 505 - -
Prci7g1625 639 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Prci7g1625 639 Pfam Ubiquitin carboxyl-terminal hydrolase 24 335 IPR001394 GO:0004843|GO:0016579
Prci7g1625 639 Gene3D Cysteine proteinases 17 340 - -
Prci7g1625 639 MobiDBLite consensus disorder prediction 385 436 - -
Prci7g1625 639 CDD Peptidase_C19E 23 336 - -
Prci7g1625 639 MobiDBLite consensus disorder prediction 487 511 - -
Prci7g1625 639 FunFam Ubiquitin carboxyl-terminal hydrolase 25 18 340 - -
Prci7g1625 639 MobiDBLite consensus disorder prediction 385 423 - -
Prci7g1625 639 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1625 Prci-Chr7 31960513 31967781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1625 23 342 Miscellaneous Gene Families AT2G24640 38.037 3.77e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1625 K11855 - gmx:100775539 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1625 7 31960513 31967781 Prci7g1625 7 31960513 31967781 ECH