Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1550 ATGGCTAAACCTGGGCGAGGTCGTCGCTCACCGCCGTCAGGTTCCGTTTCTGGCTCCTCATCGCGCTCTAGGTCTTCCTCTCCCTCCGATTCTCGCTCCAGCTCCCGTTCCCGCTCTCCCTCTCGCTCCAGATCCTTCTCCTCGTCCTCTTCTCCGTCCCGCAGTGTCAGTTCTCGAAGCCGAAGTCCCCCTCCTCCAAGAAGGAAGAGTCCTGCTGAAGCTGTTAGGAGAGGTAGATCTCCTCCTCCTCAATCTAAAAGGATATCTCCACCCCCCAGGAAACCTTCTCCTGTTCGTGAATCACTTGTTCTCCACATAGACAAACTCAGCAGGAATGTCCATGAAGGCCATTTGAAAGAAATATTTAGTAACTTCGGTGAGGTTGTAAATGTGGAGTTGGCAATGGATCGAACTGTTAACCTTCCTAAAGGATATGGATATGTGGAATTCAAGACAAGAGGGGATGCTGAAAAGGCCTTACTATACATGGATGGTGCCCAGATAGATGGTAATATTGTTAAGGCCAGATTTACCTTGCCACCAAGACAGAAGGTTTCACCACCCCCAAAGGCTTCTGCTGTTGCTCCAAAGAGAGATGCTCCAAGAACTGATAACGCTAATGCAGACACTGAAAAAGATGGGCCAAAGCGGCAAAGAGAATCTTCTCCTAGGAGAAGACCTCCTTCACCACGAAGGAGATCTCCTGTGCCTCGAAGAGTTGGATCACCAAGACGACCAGAATCTCCTGTTCGTCGTCGAATGGACTCACCCTATCGTCGCGGAGACACACCTCCTAGGAGGAGGCCTGTGTCTCCTGCAAGAGGCAGATCTCCATCTCCACCAAGGCGCCTTAGATCCCCTGCAAGTAGGGTCTCACCCAGAAGGATGCGTGGAAGTCCAATTCGTAGGCGTTCTCCTCCTCCTCCAAGGCGCCGTTCACCGCCTAGAAGAGTTCGTAGTCCTAGAAGGTCTCCAATCAATCGCAGACGCAGTCGCTCTCCACCACGAAGGTCTGCACGCTCGTGGTCAAGATCATTCTCACCACCGCGGAGAGGTCGGCCACCTATGAGACGTGGAAGGTCATCGTCATCCTTCTCTGATTCACCAAGTCCCCGCAAGGTATCCCGGAGATCAAGGAGTCGCAGTCCAAGAAGGCCATTGCGAGGAAGAGGTAGTAGCAAGAGCAGCAGCAGCAGCTCACCACCCCCAGCCCGCAGGCCATAG 1224 0.531 MAKPGRGRRSPPSGSVSGSSSRSRSSSPSDSRSSSRSRSPSRSRSFSSSSSPSRSVSSRSRSPPPPRRKSPAEAVRRGRSPPPQSKRISPPPRKPSPVRESLVLHIDKLSRNVHEGHLKEIFSNFGEVVNVELAMDRTVNLPKGYGYVEFKTRGDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPPKASAVAPKRDAPRTDNANADTEKDGPKRQRESSPRRRPPSPRRRSPVPRRVGSPRRPESPVRRRMDSPYRRGDTPPRRRPVSPARGRSPSPPRRLRSPASRVSPRRMRGSPIRRRSPPPPRRRSPPRRVRSPRRSPINRRRSRSPPRRSARSWSRSFSPPRRGRPPMRRGRSSSSFSDSPSPRKVSRRSRSRSPRRPLRGRGSSKSSSSSSPPPARRP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1550 407 Gene3D - 13 186 IPR012677 -
Prci7g1550 407 MobiDBLite consensus disorder prediction 244 269 - -
Prci7g1550 407 FunFam Serine/arginine-rich splicing factor SR45 3 187 - -
Prci7g1550 407 MobiDBLite consensus disorder prediction 296 337 - -
Prci7g1550 407 SMART rrm1_1 103 176 IPR000504 GO:0003723
Prci7g1550 407 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 2 261 - -
Prci7g1550 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 172 IPR000504 GO:0003723
Prci7g1550 407 MobiDBLite consensus disorder prediction 202 227 - -
Prci7g1550 407 CDD RRM_RNPS1 104 176 IPR034201 -
Prci7g1550 407 MobiDBLite consensus disorder prediction 179 407 - -
Prci7g1550 407 MobiDBLite consensus disorder prediction 389 407 - -
Prci7g1550 407 SUPERFAMILY RNA-binding domain, RBD 88 187 IPR035979 GO:0003676
Prci7g1550 407 MobiDBLite consensus disorder prediction 12 63 - -
Prci7g1550 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Prci7g1550 407 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1550 Prci-Chr7 31457172 31462076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1550 104 177 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 2.71e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1550 K14325 - gmx:100783566 259.225