Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1515 ATGCAGATCTTCGTCAAAACTTTGACCGGAAAGACTATCACTCTCGAGGTCGAGAGTAGCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACACTTCATTTGGTTCTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACACTTACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGAATTCCACCTGTTCAGCAGAGAGTCATATTTAATCTGCTTGCCCTTCATTAG 384 0.4375 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRVIFNLLALH 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1515 127 PANTHER UBIQUITIN 79 122 - -
Prci7g1515 127 Gene3D - 77 124 - -
Prci7g1515 127 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Prci7g1515 127 PRINTS Ubiquitin signature 32 52 IPR019956 -
Prci7g1515 127 PRINTS Ubiquitin signature 53 74 IPR019956 -
Prci7g1515 127 PRINTS Ubiquitin signature 11 31 IPR019956 -
Prci7g1515 127 FunFam Polyubiquitin 3 1 76 - -
Prci7g1515 127 SUPERFAMILY Ubiquitin-like 77 122 IPR029071 -
Prci7g1515 127 ProSiteProfiles Ubiquitin domain profile. 77 127 IPR000626 GO:0005515
Prci7g1515 127 SMART ubq_7 77 127 IPR000626 GO:0005515
Prci7g1515 127 SMART ubq_7 1 72 IPR000626 GO:0005515
Prci7g1515 127 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Prci7g1515 127 CDD Ubl_ubiquitin 1 76 - -
Prci7g1515 127 Gene3D - 1 76 - -
Prci7g1515 127 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci7g1515 127 Pfam Ubiquitin family 79 122 IPR000626 GO:0005515
Prci7g1515 127 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Prci7g1515 127 ProSiteProfiles FERM domain profile. 77 127 IPR000299 GO:0005856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1515 Prci-Chr7 31160311 31162948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1515 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 7.79e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1515 K12158 - sspl:121784815 226.098