Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1514 ATGGGAAAAGGAAGAGCTCCATGCTGTGATAAGAACAAGGTGAAGAGAGGACCTTGGAGCCCTCAAGAAGACCTCAAGCTCGTCACCTTCATCCAGAAACACGGTCATCAGAATTGGCGTTCCCTCCCCAAGCAAGCTGGCCTTCTTCGATGCGGAAAAAGCTGTCGTCTGAGATGGATCAACTATCTGAGGCCTGATGTGAAGAGAGGCAACTTCACAAAGGAAGAAGAGGAAGCTATAATGAAGCTCCATGAGGTCTTAGGAAACAAGTGGTCAAAAATTGCGTCGGAGTTGCCTGGTAGAACAGACAATGAGATCAAAAATGTGTGGCACACCCATTTGAAGAAGAAATTATTGAAGAACAGTTCATCAAATAACCTGCAGTCCAGTACTGATCAATCCAAGCAAGAATCATCCATAACCTCTTCTTCTTCATCTTCCTCAACTGAACACCAACCAGTGATGACGACAGCAATAACTCCTCAGAAAACTACAGACAATAACGAGCAAAACTCCAAAGAAAACCTTAAGGAGTCCTCACCAAATTCCTTTCAATATTCAACTGATGATCAATTATCAACACCTATCTGCAAATTACAAGACGATGATCAGCTGGAACTACTTGCAGCGGCAGGTTCTTTATTGAATCAAGAAGGACCAGATTATACTACAGTACTAAACGAGGTGATTGACAAGGGAACTAATAATGATGACAGTATTAGTGGTTTGCTTGAAATACCATTGGAGGCAGACGATGATTTTTGGAACTTGTTGGATGATGACAACATGGGAGGAGGATCCTACGTATCAAATGATCATGGTCATCAGGTTCATTCATCAGATGCTGAAACTATGAAGTGGATCAGGGAGATTGAGAAAGATCTTGGATTGGAACCTCACGCATCATCTGATGATCTTACCACAGGATTGTGTGACGTAGACATATGGCCTGATGGTATTGCTGGTTTCTGA 972 0.4259 MGKGRAPCCDKNKVKRGPWSPQEDLKLVTFIQKHGHQNWRSLPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTKEEEEAIMKLHEVLGNKWSKIASELPGRTDNEIKNVWHTHLKKKLLKNSSSNNLQSSTDQSKQESSITSSSSSSSTEHQPVMTTAITPQKTTDNNEQNSKENLKESSPNSFQYSTDDQLSTPICKLQDDDQLELLAAAGSLLNQEGPDYTTVLNEVIDKGTNNDDSISGLLEIPLEADDDFWNLLDDDNMGGGSYVSNDHGHQVHSSDAETMKWIREIEKDLGLEPHASSDDLTTGLCDVDIWPDGIAGF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1514 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 182 - -
Prci7g1514 323 Gene3D - 16 68 - -
Prci7g1514 323 MobiDBLite consensus disorder prediction 120 189 - -
Prci7g1514 323 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Prci7g1514 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Prci7g1514 323 Gene3D - 71 144 - -
Prci7g1514 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Prci7g1514 323 CDD SANT 71 114 IPR001005 -
Prci7g1514 323 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Prci7g1514 323 CDD SANT 18 63 IPR001005 -
Prci7g1514 323 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Prci7g1514 323 SMART sant 68 116 IPR001005 -
Prci7g1514 323 SMART sant 15 65 IPR001005 -
Prci7g1514 323 FunFam Transcription factor RAX3 9 69 - -
Prci7g1514 323 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Prci7g1514 323 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1514 Prci-Chr7 31147521 31150637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1514 1 134 MYB Transcription Factor Family AT1G56160 83.582 1.08e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci7g1514 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1514 K09422 - cave:132175833 261.922