Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1395 ATGGCAGCCTCTACTACAACCTCCGCGCCGCCGCGCCAGCTATCCCCGAAGGAGGCTGATATCCAGATGATGTTAGCCGCGGAGGTTCACCTTGGGACCAAAAACTGTAACTTCCAAATGGAACGATACGTCTTCAAGCGTCGCAACGATGGTATTTACATAATCAACCTTGGGAAGACTTGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCCATAGAGAACCCTCAGGACATTATAGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTGAAGTTTGCTCAATACACAGGTGCTCATGCGCTTGCTGGAAGGCACACTCCTGGGACATTCACTAACCAGCTTCAAACATCCTATAGTGAGCCTCGCCTTCTCATTCTGACTGATCCAAGAACTGATCATCAGCCCATTAAGGAAGCTGCACTTGGAAATATACCAACTATTGCCTTTTGTGACACTGATTCTCCCATGAGATATGTTGACATTGGTATTCCTGCCAACAATAAGGGAAAGCACAGCATAGGTTGTCTCTTTTGGCTATTGGCAAGGATGGTTCTGCAGATGCGGGGCACTATTCGTCCAGGGCTTAAGTGGGACGTGATGGTGGATTTATTCTTCTACAGAGAACCTGAGGAGACCAAGCAACAGGAGGAAGATGAAGCACCTGTTGCTCCAGACTTTGCTATTACGGACTTCCATGCTGCTGGCATTGCTACTGATGACCAGTGGCCTGCTGCTATTGATCAGACCTGGACGACTGAGCCAGTTCCACAGCCTATTGCTGCGGCTCCTGGTGTCAATTGGGCTGCAGATGCTGCTGGAGAATGGGGTGAATCTGTGCCAGCTCCCCAACCTCCTCTCCAACAAATTCCTACTCCCGGAATTGAGAATGTGCCTGCCACCGGGTGGGATTAA 924 0.5 MAASTTTSAPPRQLSPKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEETKQQEEDEAPVAPDFAITDFHAAGIATDDQWPAAIDQTWTTEPVPQPIAAAPGVNWAADAAGEWGESVPAPQPPLQQIPTPGIENVPATGWD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1395 307 Pfam Ribosomal protein S2 24 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 Pfam Ribosomal protein S2 122 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 MobiDBLite consensus disorder prediction 279 307 - -
Prci7g1395 307 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Prci7g1395 307 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 ProSitePatterns Ribosomal protein S2 signature 1. 21 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 Hamap 40S ribosomal protein SA [rps-0]. 8 249 IPR027498 GO:0003735|GO:0006412|GO:0015935
Prci7g1395 307 PANTHER 40S RIBOSOMAL PROTEIN SA 11 287 IPR005707 GO:0003735|GO:0006412|GO:0015935
Prci7g1395 307 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Prci7g1395 307 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Prci7g1395 307 Gene3D - 20 225 - -
Prci7g1395 307 FunFam 40S ribosomal protein SA 20 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1395 Prci-Chr7 29977026 29980000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1395 1 285 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.261 2.11e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1395 K02998 - gmx:100805318 514.227