Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1350 ATGGAGCTTGATTTGAACGAGGAGCCCTTGGACCAAACCCCTACTTCAGTGATTGGATTTGATTCTATATTGGATGAGCTAGAATCTACCCATGACCATATAGAGGAGCGCATTAGGCAACTTGAAGCAGTAACGTTGAGAGCTAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCAGTTCAAATAAATAACATTGTCGCAGATATGATGATGGTGCCTAGTGCTCAGGATGAACACAGGATGCCTCAAGAATATGGTGGGATTGCGGTCCAAGAGCAAACAGTTGTGTTAGCAGAGTTGACCAGAACTAATGCTCAAAATGAAGGTAGATTGGCTAGTGAAGAGGCTGGTGCAGTCCAAGAAAGAACGGTCAACAATAGGAAAACAGGCAAGAGGAACAGTTCCCATTTAGTAGCTCAAGCATTGGGCATGGATCCATATATAGATGAGACAGTGAGCACCACTGGGAATTTTTTTGATTGTAATATCTGTCTGGACATGGCAAGGGATCCTATTTTGACCTGCTGCGGTCATTTATTCTGCTGGCCATGCTTCTATCAGGTGTCGTTTGACTATTCAAATGTAAGGGAATGCCCTGTTTGTAAGGGAGAAGTCGCTGAAACAGGCATTATTCCAATATATGGAAGTAAAAACAACTCTAGCAACCATGAGTTGGAATTGAAAGAAAGTGGCTTCACTGTCCCTCCTCGGCCCCAGGCACCTAGGATTGAGAGTCTCAGACAGCAGCTTATAAGCAGGGGAGCATCTTCTTCTACAATCCAGGAGCTTAGGCGGTTTATTGGTGCAGCTGCAACTGATAGAACTCGTTTTTCAGTCAATCAACCTCACCATTCCCAGCCTCAAGCATTGCATGGCATGGAGACCAGAGTCAGGCAGCCTAATCGTTCACGTCTCCTTTCAAGGTTGTTAGTGGAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGGAGACCTTGAAGCATATATTCATCCGCAGCAACCTCAACCCATAGGAAGCTCTAGAGAGCTGCTTCATCCTCTTCCTCATAATAGAGATTCACCTTCTAGCATTGCTGCTACAAACCAATCTGGGAGACTTATTCCAGATGTTGCTGCAAGCAATTCCGCTGCAAATGCTTCTCTTTCTCCTTTACATATGAATAATGATGCAACTGCTGTAATAGATTCAGGTATACAGACAACAGATAGCAGTGTACAGATTAGTTCAACAGAGCCTTCCTCATCTTCTAGCAGAACTGTTGTGACAGGACTTCCAGACCTTTACAATAGGGTTTCAAATGGGCGCAGAAGGAGAAGGTTAAGAAGATGA 1371 0.4442 MELDLNEEPLDQTPTSVIGFDSILDELESTHDHIEERIRQLEAVTLRARQRQRWRRGHDSVQINNIVADMMMVPSAQDEHRMPQEYGGIAVQEQTVVLAELTRTNAQNEGRLASEEAGAVQERTVNNRKTGKRNSSHLVAQALGMDPYIDETVSTTGNFFDCNICLDMARDPILTCCGHLFCWPCFYQVSFDYSNVRECPVCKGEVAETGIIPIYGSKNNSSNHELELKESGFTVPPRPQAPRIESLRQQLISRGASSSTIQELRRFIGAAATDRTRFSVNQPHHSQPQALHGMETRVRQPNRSRLLSRLLVEGAASFSSLSSALNSAMDSAERLVGDLEAYIHPQQPQPIGSSRELLHPLPHNRDSPSSIAATNQSGRLIPDVAASNSAANASLSPLHMNNDATAVIDSGIQTTDSSVQISSTEPSSSSSRTVVTGLPDLYNRVSNGRRRRRLRR 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1350 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 216 IPR013083 -
Prci7g1350 456 Pfam zinc-RING finger domain 162 203 IPR001841 -
Prci7g1350 456 SUPERFAMILY RING/U-box 155 212 - -
Prci7g1350 456 SMART ring_2 162 202 IPR001841 -
Prci7g1350 456 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Prci7g1350 456 MobiDBLite consensus disorder prediction 345 374 - -
Prci7g1350 456 Coils Coil 24 44 - -
Prci7g1350 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 121 300 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1350 Prci-Chr7 29717717 29722113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1350 113 268 C3H Transcription Factor Family AT3G58030 43.312 5.54e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1350 - - pcin:129296436 841.262