Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1305 ATGTCTAAGAGGGTTTGTAAGTTCTACGCCCGTGGAAAATGTTTCAGAGGGGAGCAATGTGATTATTCTCATGACAAACAGGATACTCCAGTTGATATTTGCGCATTCTATCAGAAAGGACACTGCTCTTATGGTAGTCGATGTAGATATAAACATGTCAAAGCTTCTCAGGCAAGTTCTGCATCATCTTCAGAAAATGGTCGACAGTCTATGTCTTCAAAGTCTGTTATAGATCATACTACTAAAGGAAAATCTAGGTGGATTCCCAAGAGTGCAAATTCTGCAAGTGTTGGTCGTCATAAGCATCCAAATTCTCCAAAGAATGGTGATGTTGGTGAATCTAGTAATGCTGTACATGCAAAGCATAACTTTTGTACATATGCTGCAGCCAACTGCCCCTTAGGGAAAAAATGTCTACACATTCATGGTGACCAGTGTCTGTATTGTAGAAAGTATTGCTTGCATCCTACTGATCAAAGGGAGAGAGACAATCATTTGAATTCTTGTGAGAAAAAAGAAAAATACAATCAGGCATTGAAAGATAGTCAAGATATAGAGTGCAATATTTGCTTGGAGCGTGTTCTTTCAAAGCCTAAAGCATCTGAATGTAAGTTTGGGATGCTTCCTGAATGTGACCATGCGTTCTGCTTATCCTGTATCAGGAATTGGCGTAACAGTGCCTTAGACTCTGAAAAGGACATCTTTAATGCTACTAATAATACAGTGAGGACTTGCCCTGTGTGTCGCAAGCTATCATATTTTGTAATTCCAAGTCCTATATGGTACTCCACAATGGAAGAAAAGCAGGAAATTATCAATAACTACAAGGCAAATTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTTGGAGCTAGGTGTTTCTACAAGCATACCGTGAAGCCTGGCTCGGTGACATGGAGACATGGTAGGCCACCACCTCCTCGCCGCTGCAGAGCAAACAATAAAATGGACATGTGTGACATGATAGAAATGCTCAGTGAATTTGATTTACAAAGTGGAGAATTCTACAACATCATGCGGGACACTGAGTGTTTCGAAGACATGGATCCTTTGGAGATAATGGCTATATCAGATATGCTTGGTTCAGGACCCGGGTTTTTCGGTGACGAAGATTCTGATGATGAAGAAATGGGGTTTTTTGAGATGGGCGCATTATCAGCATCGTTGGAATACCCTTTTGAGGATTTGAACGTTGATGAATTAAAACCTTCGGAAGCAGCATTTTTATCAATGATGATGCGAGCTAACATGGAAGAAGATAGTGAAGAGGAGGAGGATGACTGA 1326 0.4057 MSKRVCKFYARGKCFRGEQCDYSHDKQDTPVDICAFYQKGHCSYGSRCRYKHVKASQASSASSSENGRQSMSSKSVIDHTTKGKSRWIPKSANSASVGRHKHPNSPKNGDVGESSNAVHAKHNFCTYAAANCPLGKKCLHIHGDQCLYCRKYCLHPTDQRERDNHLNSCEKKEKYNQALKDSQDIECNICLERVLSKPKASECKFGMLPECDHAFCLSCIRNWRNSALDSEKDIFNATNNTVRTCPVCRKLSYFVIPSPIWYSTMEEKQEIINNYKANCKLIDCKHFDFGNGNCPFGARCFYKHTVKPGSVTWRHGRPPPPRRCRANNKMDMCDMIEMLSEFDLQSGEFYNIMRDTECFEDMDPLEIMAISDMLGSGPGFFGDEDSDDEEMGFFEMGALSASLEYPFEDLNVDELKPSEAAFLSMMMRANMEEDSEEEEDD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1305 441 CDD RING-HC_MKRN 185 249 - -
Prci7g1305 441 SUPERFAMILY RING/U-box 177 255 - -
Prci7g1305 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 280 IPR013083 -
Prci7g1305 441 SMART ring_2 187 248 IPR001841 -
Prci7g1305 441 PANTHER MAKORIN-RELATED 1 331 IPR045072 GO:0000209|GO:0061630
Prci7g1305 441 MobiDBLite consensus disorder prediction 59 113 - -
Prci7g1305 441 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Prci7g1305 441 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Prci7g1305 441 SMART c3hfinal6 119 144 IPR000571 GO:0046872
Prci7g1305 441 SMART c3hfinal6 278 306 IPR000571 GO:0046872
Prci7g1305 441 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Prci7g1305 441 SUPERFAMILY CCCH zinc finger 28 52 IPR036855 GO:0046872
Prci7g1305 441 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Prci7g1305 441 ProSiteProfiles Zinc finger C3H1-type profile. 278 307 IPR000571 GO:0046872
Prci7g1305 441 MobiDBLite consensus disorder prediction 59 78 - -
Prci7g1305 441 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Prci7g1305 441 Pfam Zinc finger, C3HC4 type (RING finger) 187 248 IPR018957 GO:0046872
Prci7g1305 441 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Prci7g1305 441 MobiDBLite consensus disorder prediction 86 101 - -
Prci7g1305 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Prci7g1305 441 Gene3D - 1 67 - -
Prci7g1305 441 ProSiteProfiles Zinc finger RING-type profile. 187 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1305 Prci-Chr7 29336660 29340428 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci7g1305 zf-C3HC4 1.7e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1305 K15687 - gmx:100788886 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci7g1305 7 29336660 29340428 Prci7g1305 7 29336660 29340428 ECH