Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1286 ATGTTGCATGGGACAATCAAAGCTTGGCCTCACTTGTCTGCATATGAAGAAGATCCAACACATTGGATTCAGTTTGATGGCATCACAGGTTTAAGTGTTGATGGTGGTGACATTGGAACATTCAATGGCAATGGAAAGAAATGGTGGAAGAAATCTTGCAAAGTCAACAAAACACTTCCATGCACAGACGCACCAACTGCTGTAACTTTCTATGAATGCAACAATCTGACAGTGAAAAACCTGAGGTTCAGGAATTCTCAGAAAATGCATATGAATATCCAGAAATGTTTGAACGTTACACTTTCAAATCTCAATGTGAGAGCACCAGAAGACAGCCCTAACACTGATGGGATTCATGTGACAGAGACACAGAATATTCTCATCACTGACAGTACCATTGGTACAGGTGATGACTGCATTTCAATAGAAAGCGGATCCAAAAATGTTAGAATCACAGACATAACCTGCGGACCAGGACATGGAATCAGTATTGGAAGCTTAGGAGATAATAACTCAAAAGCAGAGGTGTCGAATGTGGTAGTGAACAGAGCAAAATTGAGAGGAACGACCAATGGAGTGAGAATAAAAACTTGGCAGGGAGGGTCAGGGTATGCAAGGAACATCGAATTTATGAACATAGAAGTGAAAAATGTAAGCAACCCCATCATCATAGATCAGAACTACTGTGATCAGGAAGAACCATGCCGTGAGCAGGAATCAGCAGTGGAAGTGAGTAATCTGATATACCAGAACATAAGAGGAACAAGTGCTTCAGAAGTGGCCATTAGATTTGACTGCAGCAAGACAGTGCCATGCAGAGACGTGTTCGTCAAGGATGTGACCTTAGAAGCTGAAGGAGATGGACACACCACAGCTTCTTGTGACAACGTTATCTATGTCAACCGAGGAAACCTGTCCCCTCGCTGTTCATCTCGTTGA 939 0.426 MLHGTIKAWPHLSAYEEDPTHWIQFDGITGLSVDGGDIGTFNGNGKKWWKKSCKVNKTLPCTDAPTAVTFYECNNLTVKNLRFRNSQKMHMNIQKCLNVTLSNLNVRAPEDSPNTDGIHVTETQNILITDSTIGTGDDCISIESGSKNVRITDITCGPGHGISIGSLGDNNSKAEVSNVVVNRAKLRGTTNGVRIKTWQGGSGYARNIEFMNIEVKNVSNPIIIDQNYCDQEEPCREQESAVEVSNLIYQNIRGTSASEVAIRFDCSKTVPCRDVFVKDVTLEAEGDGHTTASCDNVIYVNRGNLSPRCSSR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1286 312 ProSitePatterns Polygalacturonase active site. 153 166 IPR000743 GO:0004650|GO:0005975
Prci7g1286 312 FunFam Pectin lyase-like superfamily protein 145 309 - -
Prci7g1286 312 Pfam Glycosyl hydrolases family 28 4 297 IPR000743 GO:0004650|GO:0005975
Prci7g1286 312 PANTHER - 4 297 - -
Prci7g1286 312 SMART pbh1 205 226 IPR006626 -
Prci7g1286 312 SMART pbh1 176 197 IPR006626 -
Prci7g1286 312 SMART pbh1 146 166 IPR006626 -
Prci7g1286 312 SMART pbh1 123 144 IPR006626 -
Prci7g1286 312 SMART pbh1 96 122 IPR006626 -
Prci7g1286 312 Gene3D - 1 300 IPR012334 -
Prci7g1286 312 SUPERFAMILY Pectin lyase-like 3 310 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1286 Prci-Chr7 29167671 29171308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1286 2 310 Glycoside Hydrolase AT3G07970 59.677 1.83e-128 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1286 K01184 - gmx:732596 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci6g2383 6 34719224 34720399 Prci7g1286 7 29167671 29171308 CCT
Prci7g1286 7 29167671 29171308 Prci7g1286 7 29167671 29171308 ECH