Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1047 ATGTCTTTAAGGCAGCATAATAATGTTGAACTCAACGGTGTTTCAGCTGTGGGTTCAGGATGTTGCCTTTATGATCTTTTGTGTGCTGAAACTTCAAATTTGCAATCCCAAAAGAATCAGCAGCTACCTTCATCCGGTCCTCTAGAAAGGTTAGAGAAGTTGATGCATGAAGCCGGGAACAAGCATTGTGCTGATTGTGGGTCTCCAGAGCCAAAATGGGTATCTGCAAACATTGGAGCATTTATTTGCATAAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCATATATCAAAGGTTCTATCACTGAAGCTAGATCAATGGACAGATGATGAAGTTGATGCGCTGGCAAAGTTGGGAGGAAATAAATCAGTAAACAAGAAGTATGAAGCTTTCATTCCTAGTTATATAAAAAAGCTAAAGCCAACTTCCTCCATTGAGGAGCGTTCTGACTTTATTAGGAGAAAATACGAGTTGCTGCAATTTATGGGGTGTGATGAACAATTGTCTTGCCCCTTTATGCCACAACAGAGCAGTTCCTCATGTATCATGTCTCATCTAGACAAGAAAAATTATAATAAACAAGCAAACAAAAATCGCATTGGGAACACATTTCGCAACAGCTGGGGAAGAAAAGAACCTGATATTAATAATAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTGGAATTTGTTGGGTTGATAAAGGTTAATGTGGTTAAAGGCACTAACCTGGTAGTCCGAGATGTAGTGACTAGTGATCCTTATGTCACTCTTTCTTTGGGCCACCAATCGGTAAAGACACGAGTTATAAAGAACAATTTAAATCCTGTCTGGAATGAGAGCCTAATGTTGTCAATTCCTCACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAGCCCCTACTCGCAGTTGCAAAGGCCTTTGAGAAATCCAGAGCCAATGAATCCCTAGAGTTTGAAAAATGGACGGCGAGTTTGGAAAACACGCTCGTTAAGGACGGCGTAATCTCCCTCGAAGACGGGAAGATCAGACAAGAAATATCTGTAAAGCTGCAGAATGTGGAGAGAGGGGAGCTGGAAGTTGAGCTTGAGTGTCTTCCTCTCACTCAGTAG 1176 0.4141 MSLRQHNNVELNGVSAVGSGCCLYDLLCAETSNLQSQKNQQLPSSGPLERLEKLMHEAGNKHCADCGSPEPKWVSANIGAFICIKCSGIHRSLGVHISKVLSLKLDQWTDDEVDALAKLGGNKSVNKKYEAFIPSYIKKLKPTSSIEERSDFIRRKYELLQFMGCDEQLSCPFMPQQSSSSCIMSHLDKKNYNKQANKNRIGNTFRNSWGRKEPDINNKASKKSNSLAGMVEFVGLIKVNVVKGTNLVVRDVVTSDPYVTLSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAVAKAFEKSRANESLEFEKWTASLENTLVKDGVISLEDGKIRQEISVKLQNVERGELEVELECLPLTQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1047 391 PRINTS HIV Rev interacting protein signature 79 96 IPR001164 GO:0005096
Prci7g1047 391 PRINTS HIV Rev interacting protein signature 60 79 IPR001164 GO:0005096
Prci7g1047 391 PRINTS HIV Rev interacting protein signature 100 121 IPR001164 GO:0005096
Prci7g1047 391 CDD C2_ArfGAP 234 378 - -
Prci7g1047 391 Gene3D Arf GTPase activating protein 29 169 IPR038508 -
Prci7g1047 391 Pfam Putative GTPase activating protein for Arf 50 162 IPR001164 GO:0005096
Prci7g1047 391 FunFam stromal membrane-associated protein 1 isoform X1 31 168 - -
Prci7g1047 391 Pfam C2 domain 236 323 IPR000008 -
Prci7g1047 391 SMART C2_3c 236 331 IPR000008 -
Prci7g1047 391 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 232 324 IPR035892 -
Prci7g1047 391 ProSiteProfiles ARF GTPase-activating proteins domain profile. 45 170 IPR001164 GO:0005096
Prci7g1047 391 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Prci7g1047 391 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 233 391 - -
Prci7g1047 391 SUPERFAMILY ArfGap/RecO-like zinc finger 50 163 IPR037278 -
Prci7g1047 391 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 41 391 IPR044518 GO:0005096|GO:0005543
Prci7g1047 391 SMART arf_gap_3 49 170 IPR001164 GO:0005096
Prci7g1047 391 ProSiteProfiles C2 domain profile. 210 333 IPR000008 -
Prci7g1047 391 CDD ArfGap 51 157 - -
Prci7g1047 391 Gene3D C2 domain 234 391 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1047 Prci-Chr7 27425153 27431573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1047 43 391 C2H2 Transcription Factor Family AT4G21160 48.138 1.77e-118 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1047 K12486 - gmx:100799376 555.829