Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g1042 ATGTACAAAGAAGCAAAGGAAACAGAGCAGAAACGCATGCACATTGCAGAAGAAAAGAAAAGAAACAGAGCCAGAGATGCATCAATTTTTGAAATGAAGGATTATCTAGACTGGGTTGAAGGAAAGGGGCTTTGGAGCACATCAGCGAAAGGACCATCACCATATAGGTTCAATCTTGGAGACAATGGGAGGAAGAAGATGAGAGATCTGTACAGCAAGAGAGAGTCGTCATCATCAATAGCACCTTCATGTCAGGTGGAAAGTTGTGACAGTGATCTGAGCGAGGCTAAGCATTGCCATCGCCGCTCCAAGGTCTGTGAGTTCCATGCCAAAGCTCCTTCTGTGCTCATTGCAGGCGTGCACCAAAGGTTTTGCCAGCAATGCAACAGGCAGTTCACAAAACCCTAA 408 0.4583 MYKEAKETEQKRMHIAEEKKRNRARDASIFEMKDYLDWVEGKGLWSTSAKGPSPYRFNLGDNGRKKMRDLYSKRESSSSIAPSCQVESCDSDLSEAKHCHRRSKVCEFHAKAPSVLIAGVHQRFCQQCNRQFTKP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g1042 135 ProSiteProfiles Zinc finger SBP-type profile. 81 135 IPR004333 GO:0003677
Prci7g1042 135 Pfam SBP domain 84 130 IPR004333 GO:0003677
Prci7g1042 135 SUPERFAMILY SBT domain 82 130 IPR036893 GO:0003677|GO:0005634
Prci7g1042 135 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 130 IPR044817 GO:0003677
Prci7g1042 135 MobiDBLite consensus disorder prediction 1 23 - -
Prci7g1042 135 Gene3D - 80 133 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g1042 Prci-Chr7 27368257 27369185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g1042 77 130 SBP-box Gene Family AT2G33810 62.963 4.50e-20 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci7g1042 SBP 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g1042 - - pcin:129316666 284.263