Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0699 ATGTCTTCGAGGTTTATAGTAATTTCGGCTGTTTTTACAGCTTTAAGTTTCGCGGGTGTGGAATATGGTTCGGAGTTGTCATTCAGTAAACTGAAATCCGAAGGCATAATTGGGAAGAATTTGATTCACTTGGATAAGGAGAATGCCAATCATGTCGTTGAGTTGGTTTTGGGGTCGTACACCACCACATGGTTACTTGCAAATTTTTTGATCAATGCATTTATCCTACTCAATCTTTGTCTCAAGACTGTATTTTTCTCCGAGTTGTATCCTGCTGAAATTCGGAAGCTGGTTGAATGTCTCATTAATTATGTCATGTACAAGGGGACATTTCTACCAATGATAGTGCCTCCAACAATATATCAGGCCGGTCTGTGGTCTAGTTGGATGATAGTGCTATGTTCTTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAGGCCTTGGACTTATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATGATATATAAAACGCACCCATCCTCTATGCTTCTGTTGCTATTCTATGAGCCTGTCAGTATTGCTTGTGAGACCCTACAGGCTATTTTGTTACATGGATTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATAACACTGATAGTGGAAGGTCAAAACTGTTTGACACTTTAGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTCTTACTTGACATGGCAACTTCTTTTACAGCTCTTGGCCACTACTTGCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTGGATGCAGTGCTATTTCTAAACATACGAACACTGCTAAGTGCGATTATAAATCGCGTAAGAGCCTATATCAGGTTAAGGACAGCTTTAGGTGCACTACATGCAGCTCTTCCTGATGCAACAACTGAAGAGCTACTAGCATATGATGATGAATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAAAGTTAAACTGCAAACACCTTTTCCATCTTGCGTGTTTAAGATCCTGGTTAGATCAAGGGTTGGCAGAGATGTATACTTGTCCGACATGTCGAAAGCCACTCTTTGTTGGTCGGCCTCAAAATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAACCACATGTAAGCCAAATAGGTTCAGGGCTTGATCAGCCAAACGCTGGTAGACATGCTATGGCTGCTGGATTATTTCCCAACCAGACGCCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCAACTTGGTTGCATTCTTGGCCGAATCAAGGTGTTGATGGCGCTGGTCCCTCTACTGCAATCAGATCAGTTGGATTGGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCTTGGAGCCTTTGGCCTATGAATACTTCTCAGGCTTCTGGAAGTGGTTCACGGGTTCCTCCGAATGGGAGGTTACCTGGAGGGTCTGATAATCTACATATGAGGAATGCCCCACGTTTTGCAAATGATAATCTGGCAAATATACTGGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1761 0.4248 MSSRFIVISAVFTALSFAGVEYGSELSFSKLKSEGIIGKNLIHLDKENANHVVELVLGSYTTTWLLANFLINAFILLNLCLKTVFFSELYPAEIRKLVECLINYVMYKGTFLPMIVPPTIYQAGLWSSWMIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLMIYKTHPSSMLLLLFYEPVSIACETLQAILLHGFQLLDIWLHHSACNNTDSGRSKLFDTLAAGSLMEWKWSLIRNLGFLLDMATSFTALGHYLHIWWLHGIAFHLVDAVLFLNIRTLLSAIINRVRAYIRLRTALGALHAALPDATTEELLAYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLAEMYTCPTCRKPLFVGRPQNEASFNMRETSSEEPHVSQIGSGLDQPNAGRHAMAAGLFPNQTPNMEGISWRGAAGLDSTWLHSWPNQGVDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDTAWSLWPMNTSQASGSGSRVPPNGRLPGGSDNLHMRNAPRFANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0699 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Prci7g0699 586 SUPERFAMILY RING/U-box 327 389 - -
Prci7g0699 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Prci7g0699 586 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Prci7g0699 586 CDD RING-H2_AMFR 338 385 - -
Prci7g0699 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 389 IPR013083 -
Prci7g0699 586 Gene3D - 545 585 - -
Prci7g0699 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 586 - -
Prci7g0699 586 SMART ring_2 340 381 IPR001841 -
Prci7g0699 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Prci7g0699 586 Pfam Ring finger domain 338 382 IPR001841 -
Prci7g0699 586 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Prci7g0699 586 FunFam E3 ubiquitin protein ligase RIN2 545 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0699 Prci-Chr7 24558991 24572370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0699 60 395 C3H Transcription Factor Family AT3G16090 28.142 5.62e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0699 K10636 - gmx:100819656 860.522