Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0698 ATGTCTTCGAGGTTTATAGTAATTTCGGCTGTTTTTACAGCTTTAAGTTTCGCGGGTGTGGAATATGGTTCGGAGTTGTCATTCAGTAAACTGAAATCCGAAGGCATAATTGGGAAGAATTTGATTCACTTGGATAAGGAGAATGCCAATCATGTCGTTGAGTTGGTTTTGGGGTCGTACACCACCACATGGTTACTTGCAAATTTTTTGATCAATGCATTTATCCTACTCAATCTTTGTCTCAAGACTGTATTTTTCTCCGAGTTGTATCCTGCTGAAATTCGGAAGCTGGTTGAATGTCTCATTAATTATGTCATGTACAAGGGGACATTTCTACCAATGATAGTGCCTCCAACAATATATCAGGCCGGTCTGTGGTCTAGTTGGATGATAGTGCTATGTTCTTTAAAGATGTTTCAAACTTTGGCCAGAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAGGCCTTGGACTTATGGCCGTGTATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATGATATATAAAACGCACCCATCCTCTATGCTTCTGTTGCTATTCTATGAGCCTGTCAGTATTGCTTGTGAGACCCTACAGGCTATTTTGTTACATGGATTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATAACACTGATAGTGGAAGGTCAAAACTGTTTGACACTTTAGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATTTGGGATTCTTACTTGACATGGCAACTTCTTTTACAGCTCTTGGCCACTACTTGCATATTTGGTGGCTTCATGGCATAGCTTTCCATCTTGTGGATGCAGTGCTATTTCTAAACATACGAGTAAATATTTGTACACTGCTAAGTGCGATTATAAATCGCGTAAGAGCCTATATCAGGTTAAGGACAGCTTTAGGTGCACTACATGCAGCTCTTCCTGATGCAACAACTGAAGAGCTACTAGCATATGATGATGAATGTGCTATTTGTAGGGAGCCCATGGCCAAGGCTAAAAAGTTAAACTGCAAACACCTTTTCCATCTTGCGTGTTTAAGATCCTGGTTAGATCAAGGGTTGGCAGAGATGTATACTTGTCCGACATGTCGAAAGCCACTCTTTGTTGGTCGGCCTCAAAATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAACCACATGTAAGCCAAATAGGTTCAGGGCTTGATCAGCCAAACGCTGGTAGACATGCTATGGCTGCTGGATTATTTCCCAACCAGACGCCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCAACTTGGTTGCATTCTTGGCCGAATCAAGGTGTTGATGGCGCTGGTCCCTCTACTGCAATCAGATCAGTTGGATTGGGAAGAGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCTTGGAGCCTTTGGCCTATGAATACTTCTCAGGCTTCTGGAAGTGGTTCACGGGTTCCTCCGAATGGGAGGTTACCTGGAGGGTCTGATAATCTACATATGAGGAATGCCCCACGTTTTGCAAATGATAATCTGGCAAATATACTGGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1773 0.423 MSSRFIVISAVFTALSFAGVEYGSELSFSKLKSEGIIGKNLIHLDKENANHVVELVLGSYTTTWLLANFLINAFILLNLCLKTVFFSELYPAEIRKLVECLINYVMYKGTFLPMIVPPTIYQAGLWSSWMIVLCSLKMFQTLARDRLERLNASPSARPWTYGRVYSALLLVFLVDLFWIRLCLMIYKTHPSSMLLLLFYEPVSIACETLQAILLHGFQLLDIWLHHSACNNTDSGRSKLFDTLAAGSLMEWKWSLIRNLGFLLDMATSFTALGHYLHIWWLHGIAFHLVDAVLFLNIRVNICTLLSAIINRVRAYIRLRTALGALHAALPDATTEELLAYDDECAICREPMAKAKKLNCKHLFHLACLRSWLDQGLAEMYTCPTCRKPLFVGRPQNEASFNMRETSSEEPHVSQIGSGLDQPNAGRHAMAAGLFPNQTPNMEGISWRGAAGLDSTWLHSWPNQGVDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDTAWSLWPMNTSQASGSGSRVPPNGRLPGGSDNLHMRNAPRFANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0698 590 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 590 - -
Prci7g0698 590 FunFam E3 ubiquitin protein ligase RIN2 317 396 - -
Prci7g0698 590 SUPERFAMILY RING/U-box 331 393 - -
Prci7g0698 590 FunFam E3 ubiquitin protein ligase RIN2 549 589 - -
Prci7g0698 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 393 IPR013083 -
Prci7g0698 590 Pfam CUE domain 554 590 IPR003892 GO:0043130
Prci7g0698 590 CDD RING-H2_AMFR 342 389 - -
Prci7g0698 590 Gene3D - 549 589 - -
Prci7g0698 590 Pfam Ring finger domain 342 386 IPR001841 -
Prci7g0698 590 ProSiteProfiles Zinc finger RING-type profile. 344 386 IPR001841 -
Prci7g0698 590 SMART ring_2 344 385 IPR001841 -
Prci7g0698 590 CDD CUE_RIN3_plant 551 588 IPR035667 -
Prci7g0698 590 ProSiteProfiles CUE domain profile. 550 590 IPR003892 GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0698 Prci-Chr7 24558991 24572370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0698 60 399 C3H Transcription Factor Family AT3G16090 27.642 9.53e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0698 K10636 - gmx:100819656 854.744