Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0542 ATGAATTCTTTTTCTTATGTTCCACCTGGTTTTAGGTTTCATCCCACAGATGAAGAACTTGTTGATTACTACCTGAGGAAGAAAGTCACTTCAAGAAGAATTGATCTTAATGTCATCAAAGATGTGGACCTCTACAAGATTGAGCCTTGGGATCTTCAAGAGATTTGCAGGATAGGAACTGAAGAACAAAACGAATGGTACTTCTTTAGCCATAAAGATAAGAAATATCCAACAGGGACTCGAACAAATAGAGCCACAGCTGCAGGATTCTGGAAAGCAACAGGAAGAGATAAGGCTATCTATTCCAAGCATGATCTGATAGGGATGAGGAAAACCCTAGTTTTCTATAAGGGTCGAGCTCCTAATGGACAGAAATCAGATTGGATCATGCATGAGTATCGGCTCGAAACCGATGAAAATGGTACACCACAGGCAAAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAATAACAACCATAAGAAAAGTGAGTGAGCATGACTCTCCTTGTTGGTACGATGACCAGCAAGTCTCAACTTTCATGCAAGACTTGGACTCACCAAAGCAGCAAAATCCTCATCATCAATCTCAACATAATTTGATGTACCACCAAATCCCAATCATCAATAATAGTTATCCTTGCAAGAAAGAGCTTGATCACCCTCACAACCATCCTCATCATCACAACATGCCATTGCTTCACCAGCTTCAAACTCGCCACCACTTCCTCCCTCAGCTTCCACTTCTCGATTACCAGAACCCGAAATTGCTTCAATCTCCGGCAGCAGCTTCAACAGCTACTGTAAACCCTAGCAACAACTTAATGGCAGCATTTGGTCTTGATGTGATGAACCATGCTGCGGCATCAGCAGAAGATCAGCAAACTTTTCAGGTAACGGCTGTTTATGGCAGTAGTAGCCAAGAACATATGGCCACGGACGATGAACAAGTGACCGATTGGCGAGTACTCGACAAGTTTGTCGCATCACAACTTAGTCAAGAAGATGTGCCTACTAATAATAAGGACCACAACAATGCAGGCACAAGCAGCAGCAACAACAACATTTTTCATCAGACCATGGACAATATTGCTAGTAATGTACAGTTCAGACCATCAAATTTGGAAAAGCAAGAAATGGTGCCTGAAAATGCCTCAACGTCAACCTCAAGTTGCCCAATTGATTTGTGGAAATAG 1197 0.4219 MNSFSYVPPGFRFHPTDEELVDYYLRKKVTSRRIDLNVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQAKGWVVCRVFKKRITTIRKVSEHDSPCWYDDQQVSTFMQDLDSPKQQNPHHQSQHNLMYHQIPIINNSYPCKKELDHPHNHPHHHNMPLLHQLQTRHHFLPQLPLLDYQNPKLLQSPAAASTATVNPSNNLMAAFGLDVMNHAAASAEDQQTFQVTAVYGSSSQEHMATDDEQVTDWRVLDKFVASQLSQEDVPTNNKDHNNAGTSSSNNNIFHQTMDNIASNVQFRPSNLEKQEMVPENASTSTSSCPIDLWK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0542 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 290 - -
Prci7g0542 398 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Prci7g0542 398 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Prci7g0542 398 MobiDBLite consensus disorder prediction 332 356 - -
Prci7g0542 398 FunFam NAC domain-containing protein 16 160 - -
Prci7g0542 398 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Prci7g0542 398 MobiDBLite consensus disorder prediction 378 398 - -
Prci7g0542 398 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0542 Prci-Chr7 21053888 21058345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0542 1 398 NAC Transcription Factor Family AT1G12260 49.757 5.77e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci7g0542 NAM 5.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0542 - - pcin:129315373 808.135