Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0391 ATGACTCCGGCGAATTTGGCAGGCCAGTTTGGTGACACGACATACACCAAAGTGTTTGTAGGAGGGTTGGCTTGGGAGACTCAGAAGGAAACCATGAAGAAATATTTCGAACAGTTTGGTGAGATCTTGGAAGCTGTCGTCATCACTGACAAAGCCACTGGCAAATCTAAAGGCTATGGATTCGTAACTTTTCGAGAACCAGAAGCCGCCATGAGAGCTTGTGTGGATGCTGCTCCTGTGATAGATGGGAGGAGGGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCCAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGCAGGAACTTTAGGGTGATGGGTTCGTTTCAGACAGGGTTTGGAGGAGTAGGATCAACTTTTCCTTCTGCAGCAGCAGCAACACTTCCTCATTATGCTCTCCAGCAAGGAACACCTTATAATGTTTATGGGTACTCCCCATATTCGCCGGACTACACTTACCCTACGGGTTACTATAGTGTGTATGGAGGAGCAACTCAGTACCCACTGTATGGAACCGGACCAGGAGGTATGATGACCAGTGGTGCGGCCGCCGCCGCAGCCATCTACCCATATCTCCAGTTCGGAGAAGGGAGCGGCAGCGGCGCCTTAACCGGAGGCTACACTTCCGGCCAGGGCTACGGGGTTTACTACCCACCACAGCTCTTTCAGTACTCTCCCACCATTACTTCATCTGCTGGGTATGCCCAGCACTATGGTCCACCTATGTCTCTTGCTCCTTCGCCTGCTTTGCAATCAGGCGTGAAGATGGCTCTTCAAGCTCCACCAATTCCTCATCGTTAG 828 0.5157 MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGKSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGRNFRVMGSFQTGFGGVGSTFPSAAAATLPHYALQQGTPYNVYGYSPYSPDYTYPTGYYSVYGGATQYPLYGTGPGGMMTSGAAAAAAIYPYLQFGEGSGSGALTGGYTSGQGYGVYYPPQLFQYSPTITSSAGYAQHYGPPMSLAPSPALQSGVKMALQAPPIPHR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0391 275 SUPERFAMILY RNA-binding domain, RBD 12 112 IPR035979 GO:0003676
Prci7g0391 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Prci7g0391 275 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Prci7g0391 275 Gene3D - 4 112 IPR012677 -
Prci7g0391 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Prci7g0391 275 PANTHER BOULE-RELATED 4 252 - -
Prci7g0391 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Prci7g0391 275 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0391 Prci-Chr7 18842815 18851406 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0391 1 189 C2H2 Transcription Factor Family AT2G19380 28.365 2.00e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0391 - - qsa:O6P43_029953 421.009