LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci7g0354	ATGGCTTCCCATGAAACTCCTAATTCAAGAGTTGCCAAGGCCTTCAATGCTATGAACGACTTGGGAATTTCTCATGATGAAGTAAAACCAGTGTTACAAAAGCTATTAAAATTGCATGACGAGAATTGGGAATATATTGAAGAAGATAACTATCAAACACTTGTAGATGCATACTTTGAGCATAAGGAAGATAAGGAATCAAAAGATAAGAGAAAAGCTCTCATTAGTCATCATGATGGAGAAAGACAAACACAACCATTGGCGAATAAAGATGATGTGCTTTTTTTAACCACAAACAACTCAAGACAAAAATTTACCATGGAAGAGAATGAAATGCCTCCAAGTTCGTCTGAAGTTTTGACTAGAAATCATCATATCAAATTGGTGTCATCTCTGTATCTGGATTTAAACAGTGTCATTAATTCTGCACACAATAATAACCCCACAAGCAGCAAGGCTACTATTGACATTGCCTCTTCAGCTTTAGGAGAAGTGAAAATTTTTTTAAACTGTGACCATGCACTTGAAAACAATGCAAACATATTGACAAATGGACCACAACAAGCTATTGCTCAAGATGAGAAGTTATTTCATTTTCTTAGTGACATAACAAAAGGTTCAGAAAAGGTGAAGATATCATTGATAGATGAGTATGGTAAGGGGGAATTGCCAAATTTTAATTACATGCCACACAATCTAATATATCAGAGTGCTAATGTAAATATTTCACTGGCTCGTATTGCGGATGAAGGTTATTGCTCAAATTGTTCAGGAAACTGTCTTTCTCAATCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACTCTTCAGGGCTTGCTGAAAGATGAATTTCTAACATCTTGCATGTCTATGAAAAAGGAACCCCAAACTCATCAATTGGTGTATTGTCAAGAGTGCCCACTAGAGAGGTCTAAGAATGAATGCATGCCTGAGCAATGCAAGGGGCATCTAATCAGGAAGTTTATTAAGGAATGTTGGAGGAAATGTGGATGTGACATGCAGTGTGGAAATCGAATAGTGCAACGAGGTTTAAGATGCAAATTACAGGTTTTCTTTACTAGTGATAAAAAAGGTTGGGGTCTTAGAACACTGGAAGATTTGCCTAAGGGATCCTTTATATGTGAATATGTTGGAGAAATATTAACCAACATGGAGTTGCATGAAAGAATTATGCACAAAAATGGCAATGACAAACATACATATCCTGTGACCCTTGATGCAGACTGGGGCTCAGAAGTTGTATTAAAGGATGAGGAGGCACTGTGTCTAGATGCAACATATAATGGAAATGTTGCTAGGTTTATCAATCATAGATGCTCAGATGCAAATTTGATGGATATTCCTGTTGAAGTAGAGACTCCTGATCGCCATTATTATCATCTTGCCTTCTTTACTAACAAGAAAGTGAATGTTTATGAGGAGTTAACATGGGATTATGGTATTGACTTTGACGATCATGACCATCCTATCAAAGCATTCCAATGTTGTTGTGAAAGCCCATTCTGCCGTGACAAGAAGCGAAAAGGTCAATTAAATAATCTAAGTATTTAG	1587	0.3686	MASHETPNSRVAKAFNAMNDLGISHDEVKPVLQKLLKLHDENWEYIEEDNYQTLVDAYFEHKEDKESKDKRKALISHHDGERQTQPLANKDDVLFLTTNNSRQKFTMEENEMPPSSSEVLTRNHHIKLVSSLYLDLNSVINSAHNNNPTSSKATIDIASSALGEVKIFLNCDHALENNANILTNGPQQAIAQDEKLFHFLSDITKGSEKVKISLIDEYGKGELPNFNYMPHNLIYQSANVNISLARIADEGYCSNCSGNCLSQSLPCACAQETGGEFAYTLQGLLKDEFLTSCMSMKKEPQTHQLVYCQECPLERSKNECMPEQCKGHLIRKFIKECWRKCGCDMQCGNRIVQRGLRCKLQVFFTSDKKGWGLRTLEDLPKGSFICEYVGEILTNMELHERIMHKNGNDKHTYPVTLDADWGSEVVLKDEEALCLDATYNGNVARFINHRCSDANLMDIPVEVETPDRHYYHLAFFTNKKVNVYEELTWDYGIDFDDHDHPIKAFQCCCESPFCRDKKRKGQLNNLSI	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci7g0354	528	SMART	preset_2	200	342	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Prci7g0354	528	ProSiteProfiles	Pre-SET domain profile.	252	355	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Prci7g0354	528	SUPERFAMILY	SET domain	211	515	IPR046341	-
	Prci7g0354	528	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	520	IPR025776	-
	Prci7g0354	528	MobiDBLite	consensus disorder prediction	66	89	-	-
	Prci7g0354	528	Pfam	Ubiquitin-binding WIYLD domain	8	63	IPR018848	-
	Prci7g0354	528	ProSiteProfiles	SET domain profile.	358	492	IPR001214	GO:0005515
	Prci7g0354	528	Gene3D	SET domain	203	517	IPR046341	-
	Prci7g0354	528	FunFam	SET-domain containing protein lysine methyltransferase family protein	203	517	-	-
	Prci7g0354	528	Gene3D	-	2	64	IPR043017	-
	Prci7g0354	528	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	11	179	-	-
	Prci7g0354	528	CDD	SET_SETDB-like	224	492	-	-
	Prci7g0354	528	Pfam	SET domain	370	492	IPR001214	GO:0005515
	Prci7g0354	528	SMART	set_7	358	498	IPR001214	GO:0005515
	Prci7g0354	528	MobiDBLite	consensus disorder prediction	66	86	-	-
	Prci7g0354	528	Pfam	Pre-SET motif	203	350	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci7g0354	Prci-Chr7	17960984	17965137	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci7g0354	334	515	C2H2 Transcription Factor Family	AT2G23740	37.968	6.75e-30	123

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Prci7g0354		Pre-SET	1.3e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci7g0354	-		-	psat:127094085	624.78