Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0278 ATGGATGAGGGAAAGCGTAAATCTAGGAAGGAAGATTATGAAGGGAAGGAAGAGGATTCCAAAAGGAGTCGCCGTGAACGAGATCGTGAGAAGACTGGTGATAAAGTTAAGGATAGAAGTGAAGGGAGGCATAGGGATAGAGAGAAGAGAGATCGTGAGAGCCGACGCTATGAGAGAGAGAAAAGCAGTGATTCTGATGAAAGATTTGATAGAGAAAGAGAGAAGCATAGAGACAAGGATAAGGATAGGACACGAGTTCATGATGAAGAAAGAGAAAGAGCTCGAGACAAGAAAAGGGAAAGAGACAAGGAAGAAAGGGAAAGGGAGAGGAGAGATAGGAGGGAGAAGGAAAGAGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGGGATCGAAGAGAGCGTGAAAGGGAGAGGGAAGTGGAAAGAGAAAGGGGGAGGAGAGTAAAAGAGAGGGAGAAGCGTAAGGAAGTTGATAGTGAGTGTAGTGATGATGATTCAAGGGATAAAGAAAGAAAGCGGCACAAGAAAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGGTAGCAAGTCAAGTAGGCAAACTGAGAACATTGAGGAGGGCCCAAGGAAAAAGAGTGGAAATGATAACTCAGATGCTAATGAAAGCAAACCAAGTCGTGAGGAGGAGTTAGAGGATGAACATAGGAGGTTGGATGAAGAGATGGAAAAGAGGAGAAGGAGAGTTCAGGAATGGCAGGAGTTGAGAAGGAAGAGGGAGGAAGCTGAGAGAGAAAAGCGTGGTGAAGCAAGTGCTGATGAACCCAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCACTACAGGGAAGCCAAATACATCTATGGACGTAGATGAAGATGACAAACCTTCGGATAAAGAACCTAAGGATTCGATGGCAGTAGATGTTAGTAATGGACCTGTTACTTCTAATTTACATGATGAGACTGATGGTTCTCATGCAGATGAGGAGATTGATCCATTGGATGCTTTCATGAGTTCTATGGTTTTGCCTGAAGTTGAGAAGCTGAGTAGTTCTGTGGCTCCCGAATCTTCTAATCAAACTTCTGACTCAAAGCCCAAAGGTAACAAGGATGAGCAAAGTAATGGTAGGAACCCTAGGAAAGGGTCAAATAAATCAATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTTAGATTATGAAGACCTTGAAATTGAGGATGATCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAAACCAAAGCTGAGAAACTTTCTATTGTTGACCACTCAAAGATTGATTATAAGCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCCAAGATGACTCCTGAAGAAGTTGCAGCATATAGGAAGGAGTTGGAGTTGAAGATACATGGAAAGGATGTACCAAAGCCTGTAAAATCATGGAATCAGATTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGACTATTCAAGCTCAAGCACTCCCTGTAATTATGAGCGGTAGAGATTGCATTGGAATTGCTAAAACTGGGTCAGGTAAAACCCTTGCTTTTGTTCTGCCAATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCAATTGGCCTTATTATGGCCCCTACAAGGGAACTAGTTCAACAGATTCACAGTGATATAAAAAAATTTGCAAAAGTACTTGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACTAGTGGTGGAAAAATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTCGAACCTCAAATCACCCGAATTGTTCAGAATATTCGACCAGATCGACAAACAGTTCTCTTTTCTGCTACATTTCCTCGTCAGGTTGAAATTCTGGCTCGTAAGGTTTTGAACAAACCTGTTGAAATACAAGTTGGTGGAAGGAGTGTCGTCAACAAGGACATAACACAGCTAGTAGAGGTGAGGCCAGAAAATGATAGGTTCTTTAGGCTCTTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCACAGGAGAAATGCGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCCAAGGATCAGACAGATCGTGAATCCACAATTTCTGACTTCAAAAGCAATGTCTGCAATTTGCTGATTGCAACAAGTATTGCAGCCAGGGGTTTAGATGTCAAGGAGCTTGAATTGGTCATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTGCATCGTGTTGGACGTACAGGCCGAGCTGGTCGGAAGGGTTGTGCTATAACATTTATCTCAGAGGAAGAAGCAAGATATGCACCAGATCTGGTTAAAGCTTTGGAGCTATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGATTTATGGCAAAAGTTAATCAAGGACTTGAGCAAGCCCATGGGACTGGCTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTAAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGATAAGTCTGATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGACATCTCACAGCATCCTGCTCTTGCCCAGATTCTAGTTGCTGCCACCAAAGCAAACACTCCTGCAATGCCCTCTACTTCCCAGGTAGTTTCAAATGGAGGACTGCCTGTTTCTTTGCCTGCTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCCATTGTTCCAAGTGATGGAGCAACTCGGGCAGCATTAGCTGCTATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGCTATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGACTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTGGGCCCAATTTCTGAGTGGACTGGAGCTGCTATTACCACCAGGGGGCAGTATTTCCCACCTGGCAAGATCCCTGGACCTGGTGAACGGAAACTCTACTTGTTCATTGAGGGCCCCAGTGAACAGTCTGTTAAGAGAGCAAAAGCAGAATTGAAGCGTGTGCTGGAAGATATAACAAATCAGGCTTTGCAGCTTCCTGGTGGTGCTCAACCAGGCAAATACTCTGTTGTATAA 3384 0.4329 MDEGKRKSRKEDYEGKEEDSKRSRRERDREKTGDKVKDRSEGRHRDREKRDRESRRYEREKSSDSDERFDREREKHRDKDKDRTRVHDEERERARDKKRERDKEERERERRDRREKEREKEREKDRERERDRREREREREVERERGRRVKEREKRKEVDSECSDDDSRDKERKRHKKDDDDYKGREQEKSGSKSSRQTENIEEGPRKKSGNDNSDANESKPSREEELEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEREKRGEASADEPKFGKAWTLEGESDDEEGTTTGKPNTSMDVDEDDKPSDKEPKDSMAVDVSNGPVTSNLHDETDGSHADEEIDPLDAFMSSMVLPEVEKLSSSVAPESSNQTSDSKPKGNKDEQSNGRNPRKGSNKSIGRIIPGEESDLDYEDLEIEDDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKKNFYIEVKEIAKMTPEEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMTIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENDRFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKANTPAMPSTSQVVSNGGLPVSLPAVLGLQTAGVMPGTGLPIVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0278 1127 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 647 655 IPR000629 -
Prci7g0278 1127 Pfam DEAD/DEAH box helicase 517 688 IPR011545 GO:0003676|GO:0005524
Prci7g0278 1127 CDD KH-I_AtRH42_like 1024 1126 - -
Prci7g0278 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 850 IPR027417 -
Prci7g0278 1127 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 701 IPR014001 -
Prci7g0278 1127 MobiDBLite consensus disorder prediction 908 922 - -
Prci7g0278 1127 MobiDBLite consensus disorder prediction 1 289 - -
Prci7g0278 1127 CDD DEADc_DDX46 481 702 - -
Prci7g0278 1127 Gene3D - 702 876 IPR027417 -
Prci7g0278 1127 MobiDBLite consensus disorder prediction 297 315 - -
Prci7g0278 1127 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 873 IPR027417 -
Prci7g0278 1127 MobiDBLite consensus disorder prediction 908 940 - -
Prci7g0278 1127 SMART helicmild6 753 834 IPR001650 -
Prci7g0278 1127 Coils Coil 1091 1114 - -
Prci7g0278 1127 Coils Coil 87 136 - -
Prci7g0278 1127 SMART ultradead3 511 716 IPR014001 -
Prci7g0278 1127 Pfam Helicase conserved C-terminal domain 728 834 IPR001650 -
Prci7g0278 1127 Gene3D - 444 701 IPR027417 -
Prci7g0278 1127 Coils Coil 224 261 - -
Prci7g0278 1127 CDD SF2_C_DEAD 713 843 - -
Prci7g0278 1127 FunFam probable ATP-dependent RNA helicase DDX17 454 704 - -
Prci7g0278 1127 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 712 873 IPR001650 -
Prci7g0278 1127 MobiDBLite consensus disorder prediction 1 409 - -
Prci7g0278 1127 PANTHER RNA HELICASE 436 912 - -
Prci7g0278 1127 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 492 520 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0278 Prci-Chr7 15720542 15728347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0278 479 854 Eukaryotic Initiation Factors Gene Family AT3G19760 32.368 1.07e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0278 K12811 - gmx:100784306 1496.1