Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci7g0270 | ATGGACGCTCTCGAATCGAACCCTAATCCTCCACCATTCCTTTCATCTGAAACAGTAGCTTCGGACGATCATAACCCCACATGGACAGAAGCTAGGCCTGCGGAAAGATTTGCATCGGATTTCCTGAAGCCATATGAGCAACCTGCGAATTTCGATTTTCGGATTTCTTCGAATACCCTGGCTTCGGATGGCCAGAACATTAATGGTCAACCACAATCTGCTTCTGGGAATGGCCGCGATAGTAATTCGGAGCCTTTGAGTATAATTTATGAAAGTGCCAGGACCAGCAATACCAAGAGTGGCACCGACAGGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAAAGTCGTCGCCGGAGTCGGTGGGATCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAAGCAGGTAGCAGAACGAAGAAGAGAAAGTCACGTTGGGCTGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGGGGTATTGAGTTTGATCCCGAAATTCAAGCTTTGAATAGTAGACTTCTTGAGATTAGTCGAATGCTGCAATCTGGTCTTCCTTTAGACGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAACATGGGAATTAGAATCAACACTAGAGAATATCGTGCTCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCTGCATTCAAGCCTCCCGCCGACTATAGGCCGCCGAAGCTTCAGAAGAAGCTATATATTCCAATGAAAGAATTTCCTGGTTACAATTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATCCGGGGTAAAGGGTCAGTAAAAGAGGGTAGAATGCAACAGAAGAGGGATTTAAAACCTGACCCTTCAGAGAATGAAGATCTGCATGTCCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAAAGGCAACAGCTTAGGGAACTTGCAGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGTGAGCCTGGCCATCGCCAATATGCATGTCCCACACGCACTTCTACATTTAAGAGTGAAGTGGTATGTAAGCACTGTGGTGATGGTGGTCACCCAAGCATAGATTGTCCAGTGAAAGGAGGCACTGGCAAGAAGATGGATGACGAGTATCAAAACTTCTTGGCAGAGCTGGGAGGGACAGTGCCAGAATCAGCAATAAAGCAGAACAACACGCTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCTACTGGTGGCACATCTCAAGCTGGCTTAGGGGCTAATCCAGTTAAAAAGGAGATTGATGATACAAATTTGTATATTGGGTATTTACCTCCCACTCTTGAAGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTCATAAAAGACCGGATGACTGGGTTGAGTAAAGGATATGGGTTTGTCAAGTTTGCTGATGTCCAAATGGCGAATAATGCAATTATGGCCATGAATGGCTATCGCCTGGAGGGCAGAACTATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTGCATCCGGGCCCGCCAGCATCAGCCATGCCCACATATCCTGTTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTCTTGGTACTGCACCCCCTGGAAGTTATGTCGGTGCCCTAGTTCCATGGGGACCTCCCGTTCCTCCACCATATGCTCCTTATGCTCCTCCCCCACCTGGATCAACTAGGTACCCTCCTATTCAAGGTCAATCTATGCCTCCATACGGTGTTCAGTATCCTGCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTACGACTTCTGGCGAATCACAACAAAGTTTTCCTCCAGGAGTGCAGTCTGACAGTAGCACCTCTACTCAATCTACATCAGCAAATATGTTTGGGAGTTCAATGCCTGCTATGCCACCAACTGCTCAACCTACATATGCTACATCTTATGGTTATCCACCTTACTATGGTGCAGTGCCCCCTCCACCTCCCGCACCTATCCCAACTTCAGACCATATGCCTTGGGCTACCAATCCTACAGTGCCGCCTCCTGCATCAACTGCAGAGAAGACACCATATGGTGCAGATCAATCTCAGAGCATAGGAAATGTGCCTTGGGCGACAAATCCTCCAATGCGACCCCCTGCTTCAACTGCAGAGAAGACAACATATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA | 2436 | 0.4774 | MDALESNPNPPPFLSSETVASDDHNPTWTEARPAERFASDFLKPYEQPANFDFRISSNTLASDGQNINGQPQSASGNGRDSNSEPLSIIYESARTSNTKSGTDRDHSGGEEETTSKSRRRSRWDPQPDSNDQSGGEAGSRTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRMQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGGTGKKMDDEYQNFLAELGGTVPESAIKQNNTLAIGSGNSGSNPPWANNSGSTGGTSQAGLGANPVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKFADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVHPGPPASAMPTYPVSSQPVGAYPSQQYAAGGPLGTAPPGSYVGALVPWGPPVPPPYAPYAPPPPGSTRYPPIQGQSMPPYGVQYPAVQTAPPGAPSQPTTSGESQQSFPPGVQSDSSTSTQSTSANMFGSSMPAMPPTAQPTYATSYGYPPYYGAVPPPPPAPIPTSDHMPWATNPTVPPPASTAEKTPYGADQSQSIGNVPWATNPPMRPPASTAEKTTYGADSEYEKFMAEMK | 811 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci7g0270 | 811 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 494 | 563 | IPR000504 | GO:0003723 | |
Prci7g0270 | 811 | ProSiteProfiles | Zinc finger CCHC-type profile. | 377 | 391 | IPR001878 | GO:0003676|GO:0008270 | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 54 | 157 | - | - | |
Prci7g0270 | 811 | ProSiteProfiles | Type-1 KH domain profile. | 270 | 342 | - | - | |
Prci7g0270 | 811 | SMART | kh_6 | 255 | 347 | IPR004087 | GO:0003676 | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 764 | 779 | - | - | |
Prci7g0270 | 811 | Pfam | Splicing factor 1 helix-hairpin domain | 144 | 251 | IPR032570 | - | |
Prci7g0270 | 811 | Pfam | KH domain | 270 | 318 | IPR004088 | GO:0003723 | |
Prci7g0270 | 811 | ProSiteProfiles | Zinc finger CCHC-type profile. | 403 | 417 | IPR001878 | GO:0003676|GO:0008270 | |
Prci7g0270 | 811 | FunFam | splicing factor-like protein 1 | 247 | 375 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 757 | 800 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 451 | 479 | - | - | |
Prci7g0270 | 811 | FunFam | splicing factor-like protein 1 | 472 | 574 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 640 | 709 | - | - | |
Prci7g0270 | 811 | SUPERFAMILY | RNA-binding domain, RBD | 488 | 582 | IPR035979 | GO:0003676 | |
Prci7g0270 | 811 | FunFam | splicing factor 1 | 375 | 428 | - | - | |
Prci7g0270 | 811 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 492 | 570 | IPR000504 | GO:0003723 | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 137 | 154 | - | - | |
Prci7g0270 | 811 | SUPERFAMILY | Retrovirus zinc finger-like domains | 373 | 419 | IPR036875 | GO:0003676|GO:0008270 | |
Prci7g0270 | 811 | SMART | c2hcfinal6 | 402 | 418 | IPR001878 | GO:0003676|GO:0008270 | |
Prci7g0270 | 811 | SMART | c2hcfinal6 | 376 | 392 | IPR001878 | GO:0003676|GO:0008270 | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 54 | 97 | - | - | |
Prci7g0270 | 811 | Gene3D | - | 375 | 428 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 451 | 482 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 669 | 709 | - | - | |
Prci7g0270 | 811 | Gene3D | - | 169 | 247 | IPR047086 | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 98 | 126 | - | - | |
Prci7g0270 | 811 | SMART | rrm1_1 | 493 | 566 | IPR000504 | GO:0003723 | |
Prci7g0270 | 811 | PANTHER | RNA-BINDING PROTEIN RELATED | 109 | 613 | IPR045071 | - | |
Prci7g0270 | 811 | Gene3D | K Homology domain, type 1 | 252 | 374 | IPR036612 | GO:0003723 | |
Prci7g0270 | 811 | CDD | KH-I_BBP | 254 | 347 | - | - | |
Prci7g0270 | 811 | MobiDBLite | consensus disorder prediction | 191 | 210 | - | - | |
Prci7g0270 | 811 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 255 | 381 | IPR036612 | GO:0003723 | |
Prci7g0270 | 811 | Gene3D | - | 466 | 576 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci7g0270 | Prci-Chr7 | 15168698 | 15175209 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci7g0270 | 492 | 698 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 27.778 | 6.95e-14 | 73.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci7g0270 | K13095 | - | qsa:O6P43_029889 | 1181.78 |