Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0270 ATGGACGCTCTCGAATCGAACCCTAATCCTCCACCATTCCTTTCATCTGAAACAGTAGCTTCGGACGATCATAACCCCACATGGACAGAAGCTAGGCCTGCGGAAAGATTTGCATCGGATTTCCTGAAGCCATATGAGCAACCTGCGAATTTCGATTTTCGGATTTCTTCGAATACCCTGGCTTCGGATGGCCAGAACATTAATGGTCAACCACAATCTGCTTCTGGGAATGGCCGCGATAGTAATTCGGAGCCTTTGAGTATAATTTATGAAAGTGCCAGGACCAGCAATACCAAGAGTGGCACCGACAGGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAAAGTCGTCGCCGGAGTCGGTGGGATCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAAGCAGGTAGCAGAACGAAGAAGAGAAAGTCACGTTGGGCTGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGGGGTATTGAGTTTGATCCCGAAATTCAAGCTTTGAATAGTAGACTTCTTGAGATTAGTCGAATGCTGCAATCTGGTCTTCCTTTAGACGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAACATGGGAATTAGAATCAACACTAGAGAATATCGTGCTCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCTGCATTCAAGCCTCCCGCCGACTATAGGCCGCCGAAGCTTCAGAAGAAGCTATATATTCCAATGAAAGAATTTCCTGGTTACAATTTTATAGGGCTTATTATTGGTCCTCGAGGCAACACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATCCGGGGTAAAGGGTCAGTAAAAGAGGGTAGAATGCAACAGAAGAGGGATTTAAAACCTGACCCTTCAGAGAATGAAGATCTGCATGTCCTTGTGGAGGCAGAAACACAAGAATCACTTGATGCTGCCGCAGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAAAGGCAACAGCTTAGGGAACTTGCAGCCTTGAATGGTACAATTAGGGATGAAGAATATTGCCGGCTGTGTGGTGAGCCTGGCCATCGCCAATATGCATGTCCCACACGCACTTCTACATTTAAGAGTGAAGTGGTATGTAAGCACTGTGGTGATGGTGGTCACCCAAGCATAGATTGTCCAGTGAAAGGAGGCACTGGCAAGAAGATGGATGACGAGTATCAAAACTTCTTGGCAGAGCTGGGAGGGACAGTGCCAGAATCAGCAATAAAGCAGAACAACACGCTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCTACTGGTGGCACATCTCAAGCTGGCTTAGGGGCTAATCCAGTTAAAAAGGAGATTGATGATACAAATTTGTATATTGGGTATTTACCTCCCACTCTTGAAGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAAGTCATAAAAGACCGGATGACTGGGTTGAGTAAAGGATATGGGTTTGTCAAGTTTGCTGATGTCCAAATGGCGAATAATGCAATTATGGCCATGAATGGCTATCGCCTGGAGGGCAGAACTATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTGCATCCGGGCCCGCCAGCATCAGCCATGCCCACATATCCTGTTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTCTTGGTACTGCACCCCCTGGAAGTTATGTCGGTGCCCTAGTTCCATGGGGACCTCCCGTTCCTCCACCATATGCTCCTTATGCTCCTCCCCCACCTGGATCAACTAGGTACCCTCCTATTCAAGGTCAATCTATGCCTCCATACGGTGTTCAGTATCCTGCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTACGACTTCTGGCGAATCACAACAAAGTTTTCCTCCAGGAGTGCAGTCTGACAGTAGCACCTCTACTCAATCTACATCAGCAAATATGTTTGGGAGTTCAATGCCTGCTATGCCACCAACTGCTCAACCTACATATGCTACATCTTATGGTTATCCACCTTACTATGGTGCAGTGCCCCCTCCACCTCCCGCACCTATCCCAACTTCAGACCATATGCCTTGGGCTACCAATCCTACAGTGCCGCCTCCTGCATCAACTGCAGAGAAGACACCATATGGTGCAGATCAATCTCAGAGCATAGGAAATGTGCCTTGGGCGACAAATCCTCCAATGCGACCCCCTGCTTCAACTGCAGAGAAGACAACATATGGTGCAGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2436 0.4774 MDALESNPNPPPFLSSETVASDDHNPTWTEARPAERFASDFLKPYEQPANFDFRISSNTLASDGQNINGQPQSASGNGRDSNSEPLSIIYESARTSNTKSGTDRDHSGGEEETTSKSRRRSRWDPQPDSNDQSGGEAGSRTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRMQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGGTGKKMDDEYQNFLAELGGTVPESAIKQNNTLAIGSGNSGSNPPWANNSGSTGGTSQAGLGANPVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKFADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVHPGPPASAMPTYPVSSQPVGAYPSQQYAAGGPLGTAPPGSYVGALVPWGPPVPPPYAPYAPPPPGSTRYPPIQGQSMPPYGVQYPAVQTAPPGAPSQPTTSGESQQSFPPGVQSDSSTSTQSTSANMFGSSMPAMPPTAQPTYATSYGYPPYYGAVPPPPPAPIPTSDHMPWATNPTVPPPASTAEKTPYGADQSQSIGNVPWATNPPMRPPASTAEKTTYGADSEYEKFMAEMK 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0270 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 563 IPR000504 GO:0003723
Prci7g0270 811 ProSiteProfiles Zinc finger CCHC-type profile. 377 391 IPR001878 GO:0003676|GO:0008270
Prci7g0270 811 MobiDBLite consensus disorder prediction 54 157 - -
Prci7g0270 811 ProSiteProfiles Type-1 KH domain profile. 270 342 - -
Prci7g0270 811 SMART kh_6 255 347 IPR004087 GO:0003676
Prci7g0270 811 MobiDBLite consensus disorder prediction 764 779 - -
Prci7g0270 811 Pfam Splicing factor 1 helix-hairpin domain 144 251 IPR032570 -
Prci7g0270 811 Pfam KH domain 270 318 IPR004088 GO:0003723
Prci7g0270 811 ProSiteProfiles Zinc finger CCHC-type profile. 403 417 IPR001878 GO:0003676|GO:0008270
Prci7g0270 811 FunFam splicing factor-like protein 1 247 375 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 757 800 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 451 479 - -
Prci7g0270 811 FunFam splicing factor-like protein 1 472 574 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 640 709 - -
Prci7g0270 811 SUPERFAMILY RNA-binding domain, RBD 488 582 IPR035979 GO:0003676
Prci7g0270 811 FunFam splicing factor 1 375 428 - -
Prci7g0270 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 492 570 IPR000504 GO:0003723
Prci7g0270 811 MobiDBLite consensus disorder prediction 137 154 - -
Prci7g0270 811 SUPERFAMILY Retrovirus zinc finger-like domains 373 419 IPR036875 GO:0003676|GO:0008270
Prci7g0270 811 SMART c2hcfinal6 402 418 IPR001878 GO:0003676|GO:0008270
Prci7g0270 811 SMART c2hcfinal6 376 392 IPR001878 GO:0003676|GO:0008270
Prci7g0270 811 MobiDBLite consensus disorder prediction 54 97 - -
Prci7g0270 811 Gene3D - 375 428 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 451 482 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 9 25 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 1 32 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 669 709 - -
Prci7g0270 811 Gene3D - 169 247 IPR047086 -
Prci7g0270 811 MobiDBLite consensus disorder prediction 98 126 - -
Prci7g0270 811 SMART rrm1_1 493 566 IPR000504 GO:0003723
Prci7g0270 811 PANTHER RNA-BINDING PROTEIN RELATED 109 613 IPR045071 -
Prci7g0270 811 Gene3D K Homology domain, type 1 252 374 IPR036612 GO:0003723
Prci7g0270 811 CDD KH-I_BBP 254 347 - -
Prci7g0270 811 MobiDBLite consensus disorder prediction 191 210 - -
Prci7g0270 811 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 255 381 IPR036612 GO:0003723
Prci7g0270 811 Gene3D - 466 576 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0270 Prci-Chr7 15168698 15175209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0270 492 698 Eukaryotic Initiation Factors Gene Family AT3G16380 27.778 6.95e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0270 K13095 - qsa:O6P43_029889 1181.78