Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci7g0183 ATGATGAAAGAAATGGGAAGAGGGAAGATTGAAATAAAGAGGATAGAGAATACAACGAATCGGCAAGTGACGTTCTGCAAGAGAAGGAATGGGCTTCTGAAGAAGGCCTATGAGCTGTCTGTCCTCTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGCCGTCTCTACGAGTATTCTAACAACAACAGCATAAGGTCAACGATAGAGAGGTACAAAAAGGCTTGTTCAGATAGTTCTGGTGCATGCTCTATTACTGAAATCAATGCTCAGTATTATCAGCAAGAATCCGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCATTAAGCACACTCACTGTGAAAGAACTGAAGCAGCTGGAAAACAGACTCGAACGAGGAATCTCTCGAATCAGATCTAAGAAGCATGAGATGCTGCTAGCAGAAATCGAATACCGGCAAAAAAGGGAGATTGAGCTGGAAAATGAAAATATCTGCCTTCGGACTAAGATAGCTGAAATGGAGAGGGATGAGCAGCAAGCAAACATGGTGTCAGGAGAGGAGCAGCTGAGTGCGATGCAGCAAGCATTGGCTTCTCGCAATTTCTTCAATCCAATTACCATAATCGAACCCCCTGCAACTCCTTACTCTCACTCTGACAAGAAGATGCTTCATCTTGGGTGA 699 0.4478 MMKEMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNSIRSTIERYKKACSDSSGACSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENICLRTKIAEMERDEQQANMVSGEEQLSAMQQALASRNFFNPITIIEPPATPYSHSDKKMLHLG 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci7g0183 232 FunFam agamous-like MADS-box protein AGL11 17 101 - -
Prci7g0183 232 Coils Coil 126 149 - -
Prci7g0183 232 Coils Coil 162 182 - -
Prci7g0183 232 ProSiteProfiles K-box domain profile. 92 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0183 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Prci7g0183 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 184 - -
Prci7g0183 232 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Prci7g0183 232 Coils Coil 92 112 - -
Prci7g0183 232 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Prci7g0183 232 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Prci7g0183 232 Gene3D - 18 81 IPR036879 GO:0003677|GO:0046983
Prci7g0183 232 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Prci7g0183 232 Pfam K-box region 91 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci7g0183 232 CDD MADS_MEF2_like 6 81 IPR033896 GO:0000977|GO:0045944
Prci7g0183 232 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Prci7g0183 232 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Prci7g0183 232 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci7g0183 Prci-Chr7 11310961 11320857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci7g0183 5 232 MADS-box Gene Family AT4G09960 73.391 3.73e-113 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci7g0183 K-box 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci7g0183 K09264 - cit:102620453 365.925